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Table 2 Gene-associated positions of tags mapped to the C. cinerea genome

From: 5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea

 

Myc 5′-SAGE

S1-Pri 5′-SAGE

Putative 5′-UTR (−500, -1) a

49718 (56.5%)

61964 (52.4%)

Putative 5′-UTR (Anti-sense) b

4363 (5.0%)

8826 (7.5%)

Coding region (sense)

13201 (15.0%)

20195 (17.1%)

Coding region (Anti-sense) b

6030 (6.8%)

8902 (7.5%)

Putative 3′-UTR (+1, +500) a

2867 (3.3%)

3031 (2.6%)

Putative 3′-UTR (Anti-sense) b

2231 (2.5%)

2889 (2.4%)

Unclassified c

9643 (10.9%)

12450 (10.5%)

Total

88053 (100%)

118257 (100%)

  1. a The (−500, -1) refers to position upstream of the annotated ATG start codon, while (+1, +500) refers to position downstream of the STOP codon.
  2. b ‘Anti-sense’ means that the tag is in opposite orientation of the putative 5′/3′-UTR, or annotated coding region.
  3. c ‘Unclassified’ means that the tags could not be assigned to any annotated gene.
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BMC Genomics

ISSN: 1471-2164

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