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Table 3 Summary of the Upland cotton BIBAC end sequences (BESs) generated and their exon and SSR contents

From: Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutumL.)

Total BESs sequenced

10,752

Q20 (50–842 bp)

9,711

Paired-ends

4,441

GC level

35.50%

Total length

3,842,009 bp

Average read of BESs

395.63 bp

Number of exons:

 

 GenScan

3,022

 GeneMark

2,912

Microsatellite (di, tri, tetra, penta and hexa):

 

 Four or more repeat units

1,269

 Five or more repeat units

313

 Six or more repeat units

103

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BMC Genomics

ISSN: 1471-2164

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