Inquired upland cotton BESs | Criteria of the analysis | Sequence similarity | |||||
---|---|---|---|---|---|---|---|
 | Continuous MinMatch (bp) | 100 | 100 | 100 | 100 | 100 | 100 |
All AD-subgenome BESs | Sequence identity (%) | 100 | 95 | 90 | 80 | 70 | 60 |
(No. of BESs = 9,711; total sequence length = 3,842,009Â bp) | No. of BESs aligned | 57 | 4,587 | 6,588 | 7,118 | 7,257 | 7,277 |
 | % of BESs aligned | 0.59 | 47.24 | 67.84 | 73.30 | 74.73 | 74.94 |
 | Total sequence length of BESs aligned to the raimondii sequence (bp) | 15,539 | 1,367,385 | 1,960,413 | 2,048,311 | 1,996,820 | 1,975,511 |
 | % of sequence length of BESs aligned to the raimondii sequence | 0.41 | 35.59 | 51.10 | 53.31 | 51.95 | 51.42 |
 | Continuous MinMatch (bp) | 100 | 100 | 100 | 100 | 100 | 100 |
A-subgenome-specific BESs | Sequence identity (%) | 100 | 95 | 90 | 80 | 70 | 60 |
(No. of BESs = 418; total sequence length = 169,533Â bp) | No. of BESs aligned | 7 | 205 | 294 | 310 | 317 | 317 |
 | % of BESs aligned | 1.67 | 49.04 | 70.33 | 74.16 | 75.84 | 75.84 |
 | Continuous MinMatch (bp) | 100 | 100 | 100 | 100 | 100 | 100 |
D-subgenome-specific BESs | Sequence identity (%) | 100 | 95 | 90 | 80 | 70 | 60 |
(No. of BESs = 184; total sequence length = 71,410Â bp) | No. of BESs aligned | 1 | 88 | 128 | 136 | 139 | 139 |
 | % of BESs aligned | 0.54 | 47.83 | 69.57 | 73.91 | 75.54 | 75.54 |