Table 3 cDNA sequences obtained from NF (fruited-leaves in November) and their homologous GenBank records
cDNA | GenBank Accn No** | Size (nt) | GenBank record(s) with informing similarity | E - Value | Primer pairs used in qRT-PCR (All sequences are presented from 5’ to 3’. F: Forward, R: Reverse) |
|---|---|---|---|---|---|
NF3 NF96 | GW574256 | 900 | Nicotiana sylvestris cryptochrome 1 (cry1) mRNA (gi78217440) | F: AAACGGTTAGAACCATCAATACTTTC | |
R: CCAGTGAATTGATCAGAGAAATTAGA | |||||
NF17* NF90* | GW574257 | 1780 | Arabidopsis thaliana DNAJ heat shock family protein (At2g22360) mRNA (gi42569238) | 1e-67 | F: ATGCTGAAGAGAAGTTTAAGGAGATTAG |
R: TCAAATAATGACTCAAATAGATCAAAGG | |||||
NF69* NF99* | GW574258 | 700 | Arabidopsis thaliana PSI-N; calmodulin binding (PSAN) mRNA (gi145359627) | 2e-67 | F: GTACCATATATTTCTGAGGACTTGGAG |
R: GTTTAGAAGTTGCAAGTGGAAAAATAG | |||||
NF2* | GW574259 | 900 | Avicennia marina dehydrin (DHN) mRNA (gi157497150) | 2e-28 | F: ATGAAGGAACTTACGACACTTCAAC |
R: TAATACAAACATGAAAAAGCACACG | |||||
NF8* | GW574260 | 1000 | Lycopersicon esculentum transcription factor JERF1 (JERF1) mRNA (gi22074045) | 5e-55 | F: GAGAAACCGCCAACAAATAAGTATAG |
R: ATTTCTGGAGTTTTAGCACAATTTTC | |||||
NF9 | GW574261 | 400 | Avicennia marina class I type 2 metallothionein mRNA (gi12963447) | 2e-41 | F: GAATTGTATGAATGTTTTGGGTAAATC |
R: TTGGTTTTTCGGTATATAATTAAGCAG | |||||
NF22 | GW574262 | 1000 | A gene complex of multiple tRNA genes and Photo System II binding proteins (see Accn gi170785601 at NCBI) | 0.0 | F: GCCTCTAGGAATTTCTGGTACTTTC |
R: GTAACCTGCATTAGCAGATTCATTT | |||||
NF37* | GW574255 | 1180 | Arabidopsis thaliana EMBRYO DEFECTIVE 2734 lyase mRNA (gi30687496) | 2e-85 | F: CTGGTTGAGCTGCTTACCTATAAAA |
R: TTGCTCTGTAGCAAGATCTTTACCT | |||||
NF41* | GW574263 | 2000 | Arabidopsis thaliana splicing factor, putative (At5g64270) mRNA (gi30697984) | 0.0 | F: TTATTGAACATGGTCTTAATGATGAAA |
R: ATATATGGCATCCATAAGTGGTATGAT | |||||
NF58* | GW574264 | 4000 | Arabidopsis thaliana glycosyl hydrolase family 38 protein (At5g13980) mRNA (gi79598780) | 1e-99 | F: TTTATTAAGAAGGAGTTTGGTGTGACT |
R: AACGACTTCAAGACTCTCTCATATTTC | |||||
NF60* | GW574265 | 2000 | Arabidopsis thaliana AtEXO70E2 binding protein mRNA (gi30697462) | 7e-09 | F: ATGAGGTAGTGAAAGAAGATGGACTTA |
R: ATTATTTAGGCTCAATCTCTCCAAACT | |||||
NF95* | GW574266 | 3000 | Datura stramonium mRNA for arginine decarboxylase 1 (adc1 gene) (gi6646839) | 2e-54 | F: CTAATCACCCTTCCAAGATTCTTTACT |
R: AGAAAGCGTGGAGTATGAGTAGTATGT |