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Table 2 RPKM (Reads per Kilobase per Million mapped reads)-normalized contigs and singletons from the venom gland transcriptomes of newborn and adult C. s. simus aligned to a reference snake venom toxin ORF

From: Integrated “omics” profiling indicates that miRNAs are modulators of the ontogenetic venom composition shift in the Central American rattlesnake, Crotalus simus simus

 

Newborn

Adult

 

Contigs

Reads

Singletons

RPKM

%

Contigs

Reads

Singletons

RPKM

%

5'-NTase

1

395

1

212.20

0.06

2

334

0

532.54

0.08

BPP

2

42

1

74.66

0.02

1

11

0

56.83

0.01

CRISP

3

62

0

81.26

0.02

0

0

0

0

0

CTL

6

483

5

1,035.42

0.31

13

1,462

4

9,255.5

1.5

GC

1

143

2

124.08

0.04

3

348

2

891.07

0.14

HYA

2

346

4

245.52

0.07

4

369

1

772.30

0.12

KUN

2

15

0

18.70

0.01

2

115

3

437.76

0.07

LAO

1

1,300

0

793.68

0.24

1

1,440

1

2,617.77

0.42

NGF

1

384

0

501.22

0.15

1

917

4

3,577.02

0.58

OHA

0

0

0

0

0

0

0

0

0

0

PDE

1

308

0

383.50

0.11

1

77

0

285.28

0.04

PLA 2

27

41,700

37

94,942.21

28.37

18

11,015

9

74,618.46

12.13

SVMP

48

54,601

79

28,306.34

8.46

62

69,198

62

106,685.8

17.34

SP

191

156,291

194

207,689.54

62.07

83

105,104

62

415,323.2

67.51

VEGF

2

132

2

219.77

0.07

4

19

0

92.72

0.01

  1. Abbreviations: 5'-NTase 5'-nucleotidase, BPP bradykinin potentiating peptide, CRISP cysteine-rich secretory protein, CTL C-type lectin-like protein, GC glutaminyl cyclase, HYA hyaluronidase, KUN Kunitz-type inhibitor, LAO L-amino acid oxidase, NGF nerve growth factor, OHA ohanin, PDE phosphodiesterase, PLA 2 phospholipase A2, SVMP snake venom metalloproteinase, SP serine proteinase, VEGF vascular endothelial growth factor. Protein families found in C. s. simus proteome [15] are underlined.