ContigScape: a Cytoscape plugin facilitating microbial genome gap closing

BMC Genomics

Table 2 Strains used in this study and general sequence information

ID	Type	S`trains	Size (Mbp)	Repeat contigs	All contigs	Large contigs	Coverage	Average length	Ribosomal RNAs	Plasmid	Accession number
1	bacteria	Amycolatopsis mediterranei S699 [21]	10.25	16	75	67	31	532	4	none	CP003729
2	bacteria	Ralstonia solanacearum Po82 [22]	3.48, 1.95	26	149	115	27	328	3	none	CP002819-CP002820
3	bacteria	Amycolatopsis orientalis HCCB10007	8.95	14	69	53	25	408	4	1	CP003410
4	bacteria	Mycobacterium tuberculosis CCDC5079	4.41	27	179	147	29	434	1	none	CP002884
5	bacteria	Leptospirillum ferriphilum ML-04 [23]	2.41	>50	267	213	31	311	2	none	CP002919
6	bacteria	Bacillus thuringiensis BMB171 [24]	5.64	10	221	168	32	391	14	1	CP001903-CP001904
7	bacteria	Edwardsiella tarda EIB202 [25]	3.76	15	223	64	17	256	7	1	CP001135
8	archaea	Acidianus hospitalis W1 [26]	2.16	1	11	7	31	409	1	1 integrated	CP002535
9	virus	Cotesia vestalis	0.52	>35	572	265	135	381	none	none	HQ009524-HQ009558
9	virus	Bracovirus[27]	0.52	>35	572	265	135	381	none	none	HQ009524-HQ009558
10	mycoplasma	Mycoplasma bovis	0.95	25	111	75	49	360	2	none	CP002513
10	mycoplasma	Hubei-1 [28]	0.95	25	111	75	49	360	2	none	CP002513
11	fungi	Cordyceps militaris[29]	32.2	>100	2426	1670	147	385	NA	none	AEVU00000000

ISSN: 1471-2164