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Table 2 Gene Ontology (GO) analysis

From: Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses

  

LEAF

ROOT

STEM

  

Mild water stress

Severe water stress

Mild water stress

Severe water stress

Mild water stress

Severe water stress

GO Term

Description

FDR

Num

FDR

Num

FDR

Num

FDR

Num

FDR

Num

FDR

Num

Cellular Component

            

GO:0009579

thylakoid

4.80E-05

27

—

—

—

—

—

—

—

—

—

—

GO:0005576

extracellular region

—

—

—

—

2.00E-06

47

6.00E-05

81

4.30E-03

25

2.00E-03

96

Molecular Function

            

GO:0003824

catalytic activity

4.10E-02

1042

2.00E-08

1065

3.20E-03

554

4.10E-07

1309

—

—

—

—

GO:0005215

transporter activity

4.10E-02

181

—

—

4.80E-04

112

9.30E-03

219

—

—

—

—

Biological Process

            

GO:0015979

photosynthesis

3.00E-08

43

1.20E-03

29

—

—

—

—

—

—

—

—

GO:0008152

metabolic process

9.40E-06

1144

4.40E-04

1069

—

—

—

—

—

—

—

—

GO:0006519

cellular amino acid and derivative metabolic process

4.10E-03

85

7.90E-03

79

—

—

1.60E-02

93

—

—

—

—

GO:0006091

generation of precursor metabolites and energy

2.30E-02

64

—

—

—

—

—

—

—

—

—

—

GO:0005975

carbohydrate metabolic process

2.40E-02

139

1.20E-04

153

1.70E-02

79

1.90E-04

181

1.20E-03

56

1.50E-04

239

GO:0009628

response to abiotic stimulus

3.30E-02

137

—

—

—

—

9.20E-03

167

2.70E-02

48

3.10E-02

214

GO:0006629

lipid metabolic process

—

—

1.50E-02

90

—

—

2.40E-02

106

3.40E-02

32

6.10E-05

166

GO:0050896

response to stimulus

—

—

—

—

2.80E-05

138

1.00E-07

300

—

—

3.10E-02

333

GO:0006950

response to stress

—

—

—

—

5.30E-05

121

1.00E-07

269

3.20E-02

63

1.20E-02

302

GO:0000003

reproduction

—

—

—

—

4.20E-02

13

—

—

—

—

—

—

GO:0042592

homeostatic process

—

—

—

—

—

—

2.40E-02

177

1.60E-02

55

3.10E-02

235

GO:0065008

regulation of biological quality

—

—

—

—

—

—

2.40E-02

184

1.60E-02

56

4.50E-02

241

GO:0032501

multicellular organismal process

—

—

—

—

—

—

2.40E-02

172

4.40E-02

48

—

—

GO:0065007

biological regulation

—

—

—

—

—

—

—

—

3.40E-02

124

—

—

  1. The analysis was performed using the Singular Enrichment Analysis (SEAcompare) on the AgriGO website (Du et al., 2010, http://bioinfo.cau.edu.cn/agriGO/). This tool allowed the identification of GO terms that were significantly enriched in the lists of entities differentially regulated between mild or severe water stress and well-watered control (FC≥2, p≤0.05). For each condition, the false discovery rate (FDR) and the number of entities (Num) are shown where the GO term enrichment was significant.
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BMC Genomics

ISSN: 1471-2164

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