Table 1 Validated SNPs and their distribution over the chromosomes
From: Tomato breeding in the genomics era: insights from a SNP array
Chromosome | 454-seq on cDNA from breeding lines | Illumina Solexa on gDNA from breeding lines | Illumina Solexa on gDNA from introgression free varieties | Markers from previous analysis | Total SNPs per chromosome |
|---|---|---|---|---|---|
1 | 195 | 45 | 103 | 4 | 347 |
2 | 183 | 38 | 47 | 6 | 274 |
3 | 94 | 10 | 136 | 0 | 240 |
4 | 244 | 149 | 359 | 8 | 760 |
5 | 138 | 460 | 97 | 2 | 697 |
6 | 375 | 349 | 183 | 2 | 909 |
7 | 106 | 54 | 43 | 0 | 203 |
8 | 87 | 28 | 30 | 9 | 154 |
9 | 299 | 151 | 32 | 12 | 494 |
10 | 33 | 36 | 519 | 0 | 588 |
11 | 104 | 57 | 41 | 3 | 205 |
12 | 107 | 249 | 225 | 6 | 587 |
Unknown position | 15 | 26 | 28 | 1 | 70 |
Total | 1980 | 1652 | 1843 | 53 | 5528 |