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Table 2 Summary of alternative splice events detected by RNA-Seq

From: The developing xylem transcriptome and genome-wide analysis of alternative splicing in Populus trichocarpa(black cottonwood) populations

 

Alternative splice (AS) type1, 2

 
 

A3SS

A5SS

IR

ES

Total

Number AS events detected

8963

5545

11175

2219

27902

% of AS events

32.1

19.9

40.0

8.0

100

Number in 1 individual

4560

2873

4194

1224

12851

Number in ≥ 15 individuals

572

310

651

59

1592

Number in 20 individuals

195

80

134

15

424

% in 1 individual only

50.1

51.2

37.5

55

46

% in ≥15 individuals

6.4

5.6

5.8

2.7

5.7

% in 20 individuals

2.2

1.4

1.2

0.7

1.5

  1. 1A3SS, alternative 3′ splice site; A5SS, alternative 5′ splice site; IR, intron retention; ES, exon skip.
  2. 2Data are for all AS events detected.
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BMC Genomics

ISSN: 1471-2164

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