A. Genes up-regulated by infection with HPIV3 | |||||||
 |  |  | Fold change | ||||
GB# | Gene name | Gene symbol | HPIV3-infected/mock-infected | RSV-infected/mock-infected | TIGR4-infected/mock-infected | HPIV3-TIGR4-infected/mock-infected | RSV-TIGR4-infected/mock-infected |
AA406020 | ISG15 ubiquitin-like modifier | ISG15 | 23.80 | 1.10 | 1.05 | 24.76 | 1.15 |
AA456886 | Myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 | MX1 | 23.68 | 1.11 | 1.04 | 16.12 | 1.12 |
AA286908 | Myxovirus (influenza virus) resistance 2 | MX2 | 13.84 | 1.06 | 1.05 | 12.35 | 1.04 |
T95113 | Radical S-adenosyl methionine domain containing 2 | RSAD2 | 11.72 | 0.90 | 1.11 | 4.49 | 1.39 |
AA126958 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 | DDX58 | 11.55 | 1.16 | 0.88 | 9.94 | 0.96 |
AA419251 | Interferon induced transmembrane protein 1 (9-27) | IFITM1 | 7.32 | 0.96 | 0.99 | 5.88 | 0.76 |
AA421603 | SAM domain and HD domain 1 | SAMHD1 | 5.67 | 0.96 | 0.89 | 4.80 | 0.86 |
AI245550 | Phospholipid scramblase 1 | PLSCR1 | 5.00 | 0.91 | 0.95 | 3.36 | 1.11 |
AA995904 | TCF3 (E2A) fusion partner | TFPT | 4.05 | 1.35 | 1.05 | 4.12 | 0.91 |
AA827287 | Interferon-induced protein 35 | IFI35 | 3.85 | 1.10 | 0.95 | 3.40 | 1.00 |
H54629 | Tumor necrosis factor (ligand) superfamily, member 10 | TNFSF10 | 3.64 | NA | 1.18 | 4.32 | NA |
AA862371 | Interferon induced transmembrane protein 2 (1-8D) | IFITM2 | 3.37 | 0.85 | 0.92 | 2.18 | 0.93 |
AA877255 | Interferon regulatory factor 7 | IRF7 | 3.25 | X | 1.06 | 2.13 | 0.71 |
R07870 | Baculoviral IAP repeat-containing 3; inhibitor of apoptosis protein | - | 3.09 | 2.09 | 1.20 | 1.79 | 1.60 |
AI038270 | Eukaryotic translation initiation factor 2-alpha kinase 2 | EIF2AK2 | 2.91 | 1.11 | 0.99 | 1.56 | 1.04 |
AA479795 | Interferon stimulated exonuclease gene 20kda | ISG20 | 2.91 | NA | 1.10 | 2.29 | NA |
N67034 | Interferon-induced protein 44-like | IFI44L | 2.87 | 1.01 | 1.05 | 2.90 | 0.94 |
AA418724 | Zinc finger CCCH-type, antiviral 1 | ZC3HAV1 | 2.82 | 1.53 | 1.31 | 1.77 | 1.49 |
N75384 | Peroxisome proliferator-activated receptor gamma, coactivator 1 beta | PPARGC1B | 2.45 | 0.78 | 0.94 | NA | 0.58 |
W37864 | Phosphatase and tensin homolog | PTEN | 2.43 | 0.90 | 0.93 | 1.05 | 0.78 |
H17861 | Ring finger protein 213 | RNF213 | 2.26 | 1.05 | 1.03 | 1.14 | 1.02 |
AA983252 | Signal transducer and activator of transcription 2, 113kda | STAT2 | 2.23 | X | 1.12 | 1.53 | NA |
R70479 | Tumor necrosis factor, alpha-induced protein 3 | TNFAIP3 | 2.17 | 0.75 | 1.03 | NA | 0.73 |
AA128561 | Collagen, type XVII, alpha 1 | COL17A1 | 1.95 | 1.11 | 1.99 | 1.16 | 1.15 |
AI016022 | NLR family, CARD domain containing 5 | NLRC5 | 1.93 | X | X | X | 0.94 |
N70463 | B-cell translocation gene 1, anti-proliferative | BTG1 | 1.90 | 1.43 | 1.13 | NA | 1.39 |
H61758 | ELK4, ETS-domain protein (SRF accessory protein 1) | ELK4 | 1.86 | 0.80 | 0.87 | NA | 1.03 |
R33456 | Desmoplakin | DSP | 1.82 | 1.03 | 0.88 | 1.18 | 0.86 |
AI085559 | Arylacetamide deacetylase-like 1 | AADACL1 | 1.80 | 1.64 | X | 1.69 | 1.79 |
AA609992 | Dehydrogenase/reductase (SDR family) member 9 | DHRS9 | 1.78 | 1.45 | 0.95 | 1.09 | 1.50 |
AA136060 | Polycomb group ring finger 5 | PCGF5 | 1.74 | 0.99 | 0.96 | 1.21 | 0.82 |
AI364513 | Scavenger receptor class B, member 2 | SCARB2 | 1.72 | 1.06 | NA | NA | 0.97 |
AA491191 | Interferon, gamma-inducible protein 16 | IFI16 | 1.72 | 1.38 | 0.94 | 0.97 | 1.99 |
AA451844 | Microtubule associated monoxygenase, calponin and LIM domain containing 2 | MICAL2 | 1.70 | 0.91 | 0.91 | X | 0.79 |
R92801 | CD47 molecule | CD47 | 1.68 | 1.57 | 1.01 | 1.16 | 1.64 |
R93911 | Glycogen synthase kinase 3 beta | GSK3B | 1.68 | 1.29 | NA | NA | 1.32 |
AA776304 | Pleckstrin 2 | PLEK2 | 1.67 | 0.97 | NA | 1.81 | 1.08 |
AA490894 | Endoplasmic reticulum aminopeptidase 1 | ERAP1 | 1.67 | 1.19 | 0.87 | X | 1.25 |
AA777854 | Ring finger protein 12 | RNF12 | 1.67 | 0.85 | 0.99 | NA | 0.92 |
AA040699 | ELK3, ETS-domain protein (SRF accessory protein 2) | ELK3 | 1.65 | 0.99 | 0.91 | X | 0.86 |
H95362 | Claudin 1 | CLDN1 | 1.64 | 0.83 | NA | 1.26 | 1.20 |
AA411757 | Carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) | CEACAM1 | 1.63 | X | NA | 1.41 | 0.51 |
AA284668 | Plasminogen activator, urokinase | PLAU | 1.63 | 1.15 | 1.27 | X | 1.25 |
AA135422 | CCR4-NOT transcription complex, subunit 1 | CNOT1 | 1.63 | 0.99 | 0.89 | 1.04 | 1.05 |
AI049712 | Epidermal growth factor receptor | EGFR | 1.62 | 1.00 | 0.91 | 1.13 | 0.96 |
N70848 | Ring finger protein 141 | RNF141 | 1.58 | 1.11 | 0.94 | 1.08 | 0.90 |
AA005112 | LIM domain 7 | LMO7 | 1.58 | 0.89 | 0.83 | 0.81 | 0.77 |
AA488674 | Myeloid cell leukemia sequence 1 (BCL2-related) | MCL1 | 1.58 | 0.96 | X | X | 0.84 |
AA018412 | Coiled-coil domain containing 93 | CCDC93 | 1.57 | 0.92 | 1.11 | 1.03 | 0.85 |
AA478738 | Catenin, beta interacting protein 1 | CTNNBIP1 | 1.55 | 0.97 | 0.88 | X | 1.03 |
AI652954 | Transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) | TGM1 | 1.54 | 0.67 | 0.86 | 1.05 | 0.56 |
N59721 | Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 | SERPINE2 | 1.54 | 0.69 | 0.88 | X | 0.93 |
AA001432 | Laminin, alpha 3 | LAMA3 | 1.53 | 1.23 | 0.86 | 0.94 | 1.21 |
AA706099 | NEDD4 binding protein 1 | N4BP1 | 1.52 | 1.08 | 1.01 | 1.19 | 0.98 |
N33214 | Matrix metallopeptidase 14 (membrane-inserted) | MMP14 | 1.52 | 0.84 | 0.79 | 1.26 | 0.91 |
B. Genes up-regulated by infection with RSV | |||||||
AA406373 | Transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) | TAP2 | 1.46 | 2.28 | 1.10 | 1.18 | 1.27 |
AA620877 | Protein tyrosine phosphatase, receptor type, M | PTPRM | X | 2.11 | 1.10 | 1.18 | 1.27 |
R07870 | Baculoviral IAP repeat-containing 3; inhibitor of apoptosis protein | - | 3.09 | 2.09 | 1.20 | 1.79 | 1.60 |
AA701353 | Hypothetical protein LOC92270 | LOC92270 | 0.79 | 2.07 | 0.90 | 1.34 | 2.45 |
AA001983 | Hypothetical LOC92482 | LOC92482 | 0.83 | 1.74 | 1.08 | NA | X |
AI014782 | Trinucleotide repeat containing 6B | TNRC6B | 1.22 | 1.99 | 1.08 | 0.86 | 1.88 |
H80712 | Caspase 10, apoptosis-related cysteine peptidase | CASP10 | X | 1.73 | 0.79 | X | 1.84 |
H23077 | Rho family GTPase 1 | RND1 | X | 1.71 | X | NA | 1.75 |
AA903644 | Protocadherin beta 19 pseudogene | PCDHB19P | 0.84 | 1.65 | X | X | 1.67 |
AI085559 | Arylacetamide deacetylase-like 1 | AADACL1 | 1.80 | 1.64 | NA | 1.69 | 1.79 |
H01197 | Pleckstrin homology domain containing, family F (with FYVE domain) member 2 | PLEKHF2 | 0.96 | 1.63 | 0.87 | 0.87 | 1.35 |
R36431 | Fibronectin type III domain containing 3A | FNDC3A | 1.37 | 1.62 | 0.92 | 1.03 | 1.41 |
AA047413 | Zinc finger protein 23 (KOX 16) | ZNF23 | NA | 1.60 | 1.18 | X | 1.20 |
AA903552 | Lysozyme-like 1, lysozyme-like 2 | LYZL1, LYZL2 | X | 1.58 | NA | NA | 1.79 |
AA485438 | Ring finger protein 187 | RNF187 | 0.84 | 1.58 | 1.02 | 0.86 | 1.18 |
R92801 | CD47 molecule | CD47 | 1.68 | 1.57 | 1.01 | 1.16 | 1.64 |
AI168153 | Pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 | PLEKHA8 | X | 1.57 | X | X | 1.41 |
AA878257 | Colony stimulating factor 1 | CSF1 | X | 1.57 | NA | NA | 1.13 |
AA418724 | Zinc finger CCCH-type, antiviral 1 | ZC3HAV1 | 2.82 | 1.53 | 1.31 | 1.77 | 1.49 |
AI004484 | Zinc finger protein 318 | ZNF318 | X | 1.52 | 1.29 | NA | 1.62 |
C. Genes up-regulated by infection with TIGR4 | |||||||
T65736 | Selenium-binding protein | SELENBP1 | 3.98 | 0.65 | 1.35 | 1.12 | NA |
AI093729 | ADAM metallopeptidase with thrombospondin type 1 motif, 2 | ADAMTS2 | 3.87 | 1.61 | 1.59 | 0.59 | NA |
AA443000 | Granulocyte colony stimulating factor receptor | CSF3R | 2.75 | 1.43 | 0.89 | 1.10 | 0.93 |
AA460304 | Human ribosomal DNA complete repeating unit | CRISPLD2 | 2.58 | NA | 1.27 | NA | 0.75 |
AI003033 | Neural cell adhesion molecule 2 | NCAM2 | 2.56 | 1.50 | 1.43 | 1.36 | 0.97 |
AA904923 | HNF1 homeobox B | HNF1B | 2.34 | 0.65 | 1.40 | NA | 1.30 |
AA521362 | CR2/CD21/c3d/Epstein-Barr virus receptor complement component receptor 2 | CR2 | 2.33 | NA | 1.15 | NA | 0.99 |
T98262 | General transcription factor IIIC, polypeptide 3 | GTF3C3 | 2.33 | 0.96 | 1.50 | NA | 0.72 |
AA904604 | RIKEN | LOC143678 | 2.21 | 1.11 | 0.80 | 1.46 | 0.95 |
AI188215 | Neuregulin 1 | NRG1 | 2.21 | NA | 0.91 | NA | 0.80 |
W60968 | Myelin protein zero-like protein2; Epithelial V-like antigen 1 precursor | MPZL2 | 2.19 | NA | 2.47 | NA | 0.36 |
R88767 | Protocadherin 10; protocadherin 20 precursor | PCDH20 | 2.13 | 0.72 | 1.34 | NA | 0.81 |
R01281 | Src kinase-associated phosphoprotein1; SKAP55 protein | SKAP55 | 1.94 | NA | 1.22 | NA | 1.17 |
AA150694 | LY6/PLAUR domain containing 6 | LYPD6 | 1.85 | NA | 1.26 | NA | 1.08 |
AA707615 | Chromosome 9 open reading frame 116 | C9orf116 | 1.83 | 0.73 | 1.05 | NA | 0.87 |
H57180 | Phospholipase C-like phospholipase C, gamma 2 (phosphatidylinositol-specific) | PLCG2 | 1.82 | NA | 1.23 | NA | 1.09 |
AA883775 | Metallaproteinase-disintegrin | ADAM30 | 1.80 | 0.32 | 1.19 | NA | 2.26 |
AI361560 | Homeo box C9 | HOXC9 | 1.76 | 0.59 | 0.91 | 0.89 | 0.93 |
AI380234 | C1qr(p) complement component C1q receptor | CD93 | 1.76 | 0.55 | NA | 0.56 | NA |
R86733 | Zinc finger protein | ZNF397 | 1.74 | NA | 1.59 | NA | 1.10 |
R08109 | Alu subfamily J sequence contamination warning entry | ZNF398 | 1.70 | 1.02 | 0.96 | 0.81 | 1.05 |
AA176413 | F-box protein Fbx20 | FBX20 | 1.70 | 0.36 | 1.08 | NA | 1.09 |
H90292 | Procollagen type V alpha 2 | SERPINA1 | 1.70 | 1.77 | 0.94 | 1.47 | 0.76 |
AA680249 | Bactericidal/permeability-increasing protein | BPI | 1.69 | 1.20 | 2.06 | 1.24 | NA |
R43755 | Intraflagellar transport protein 57 homolog | ESRRBL1 | 1.68 | 1.35 | 1.28 | 0.97 | 1.05 |
AA620742 | Xenotropic and polytropic retrovirus receptor | XPR1 | 1.67 | 1.37 | 0.87 | 0.82 | 1.00 |
AA137073 | Integrin, beta-like 1 (with EGF-like repeat domains) | ITGBL1 | 1.66 | 0.81 | 1.03 | 0.74 | 0.99 |
T70368 | Integrin, beta 5 | ITGB5 | 1.66 | 1.03 | 1.09 | 1.64 | 1.01 |
R76099 | Toll-like receptor 3 | TLR3 | 1.62 | 0.58 | 0.83 | NA | 0.85 |
H52352 | Complement factor properdin | CFP | 1.62 | NA | 1.54 | NA | 0.54 |
R98903 | Scavenger receptor class B, member 1 | SCARB1 | 1.59 | NA | 1.01 | NA | 0.73 |
AA150507 | Interleukin 1, beta | IL1B | 1.59 | 1.99 | 1.81 | 1.17 | 0.56 |
T98612 | Alpha-1 type III collagen | COL3A1 | 1.57 | 1.74 | 0.83 | NA | 1.06 |
T52330 | Interleukin 6 receptor | IL6R | 1.57 | 1.36 | 1.06 | 1.07 | 1.17 |
AA010600 | Nuclear RNA export factor 3 | NXF3 | 1.56 | 1.58 | 1.23 | 0.99 | 1.00 |
AA176249 | Transforming growth factor, beta 2 | TGFB2 | 1.56 | 0.64 | 0.87 | NA | 1.18 |
R10099 | Stabilin-2 | STAB2 | 1.56 | 0.98 | 1.10 | 1.18 | 1.21 |
N32241 | Zinc finger protein 160 | ZNF160 | 1.55 | NA | 1.10 | NA | 1.06 |
W94121 | Tumor necrosis factor receptor superfamily, member 19 | TNFRSF19 | 1.55 | 1.17 | 1.06 | 0.53 | 0.92 |
H93115 | Ras association (ralgds/AF-6) and pleckstrin homology domains 1 | RAPH1 | 1.54 | 1.56 | 0.72 | 0.80 | NA |
AA455067 | Non-Ab component of amyloid peptide precursor | SNCA | 1.54 | NA | 1.14 | NA | 0.93 |
R68721 | Apo-2 ligand, TNF-related apoptosis inducing ligand TRAIL | TNFSF10 | 1.54 | NA | 0.83 | NA | 1.24 |
AA456622 | Wiskott-Aldrich syndrome protein interacting protein | WIPF1 | 1.54 | NA | 1.16 | NA | 1.00 |
H74265 | Protein tyrosine phosphatase, receptor type, C | PTPRC | 1.53 | NA | 1.15 | NA | 1.20 |
T68892 | Secreted apoptosis related protein 2 | SFRP1 | 1.52 | NA | 0.95 | 1.17 | 1.16 |
AA780815 | Alpha-2 type VIII collagen | COL8A2 | 1.50 | 0.98 | 1.14 | 1.43 | 0.83 |