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Table 2 Putative selective sweep regions identified by analysis of BovineSNP50 genotypes

From: Detection of selective sweeps in cattle using genome-wide SNP data

Breed

BTA

UMD3.1 coordinates (bp)

# SNP

Size (bp)

Angus1

1

1,712,261-2,013,659

11

301,398

Limousin

2

5,974,885-6,344,425

7

369,540

Brown Swiss

2

73,436,684-73,978,469

10

541,785

Hanwoo1

3

19,860,064-20,175,158

5

315,094

Hanwoo1

3

112,997,892-113,219,287

5

221,395

Brown Swiss

4

61,098,696-61,376,132

9

277,436

Hereford

6

70,655,812-70,865,694

6

209,882

Brown Swiss

62

75,830,633-76,696,893

9

866,260

Salers

 

75,996,320-76,696,893

8

700,573

Jersey

6

105,390,830-105,730,372

8

339,542

Limousin

7

40,250,259-40,485,825

7

235,566

Jersey

7

45,439,468-45,828,427

10

388,959

Holstein

7

72,908,532-73,126,315

7

217,783

Brown Swiss

11

25,577,969-25,941,999

10

364,030

Jersey

12

1,113,009-1,436,093

8

323,084

Angus1, Salers, Shorthorn, Simmental1

12

25,878,820-26,236,394

7

357,574

Brahman1

12

36,287,533-36,989,957

14

702,424

Holstein

13

15,456,721-15,683,571

6

226,850

Braunvieh

14

28,674,493-28,960,475

5

285,982

Brown Swiss

14

42,739,573-43,140,076

9

400,503

Braunvieh

16

39,714,165-39,898,049

3

389,103

Salers

16

43,200,419-43,618,684

9

418,265

Jersey

16

45,376,614-45,874,144

8

497,530

Angus1, Holstein, Limousin, Simmental1

 

45,425,579-45,874,144

7

448,565

Hereford

 

45,464,423-45,874,144

6

409,721

Hanwoo1

16

52,535,473-52,742,523

4

207,050

Hanwoo1

18

14,526,709-14,847,049

5

320,340

Limousin

19

37,301,353-37,520,214

6

218,861

Brahman1

19

43,376,032-43,835,219

10

459,187

Angus1, Holstein, Shorthorn

24

63,576-320,143

6

256,567

Braunvieh, Charolais, Finnish Ayrshire, Hanwoo1

 

105,589-320,143

5

214,554

Angus1, Holstein, Salers, Shorthorn

27

25,075,449-25,295,935

6

220,486

  1. 1These breeds were also genotyped with the AFFXB1P assay and allow the potential validation of these putative selective sweep regions.
  2. 2Call rates for some SNP within this region did not exceed the 85% threshold that was applied to the remaining data.