Table 1 Summary information on identified RAYTs and their cognate REP elements in sequenced fluorescent pseudomonads
RAYT/REP symbol | RAYT accession number | Cognate REP sequence | |
|---|---|---|---|
Orthogroup I | PF1 | YP_002873491 (P. fluorescens SBW25) | GTGGGAGGGGGCTTGCCCCCGAT |
PF2 | n.a. | GTGGGAGGGGGCTTGCTCCCGAT | |
Orthogroup II | PF3 | n.a. | GTAGGAGCyGGCTTGCCrGCGAA |
PF4 | EJM82571 (P. sp. GM60) | GTAGGAGCCGGCTTGCTGGCGAT | |
Orthogroup III | PF5 | EJN28792 (P. sp. GM80) | GTGGyGAGGGGATTTATCCCCG |
PF6 | n.a. | GTGGCGAGGGGGCTTGTCCCCCG | |
PF7 | EJM60273 (P. sp. GM49) | GTGGCGAGGGGGCTTGCCCCCG | |
Orthogroup IV | PF8 | EIK66912 (P. fluorescens Q8r1-96) | GTGGGAGCGAGCTTGCTCGCGAT |
PF9 | EKA23398 (P. fluorescens BBc6R8) | GTGGGAGCGGGCTTGCTCGCGAA | |
PF10 | EJM47370 (P. sp. GM33) | GTGGGAGCGAGCyTGCTCGCGAA | |
PF11 | n.a. | GTAGGAGTGAGCCTGCTCGCGAT | |
PF12 | YP_006323329 ( P. fluorescens A506) | GTGGGAGCTGGCTTGCCTGCGAT | |
PF13 | n.a. | GTGGGAGCGGGCTTGCCCGCGAT | |
PF14 | ZP_10622153 (P. sp. GM78) | GTGGGAGCTGGCTTGCCAGCGAT | |
PF15 | EJM57603 (P. sp. GM41 (2012)) | GTGGGAGCCAGCCTGCTGGCGAT | |
PF16 | EJM16763 ((P. sp. GM21) | GTGGGAGCTAGCCTGCTAGCGAT | |
NO * | PF17 | YP_002871781 (P. fluorescens SBW25) | GTGGCGAGGGAGCTTGCTCCCGCT |
NO * | PF18 | ZP_10436910 (P. extremaustralis 14–3) | GTAGGAGCGAGCyyGCTCGCGA |
NO * | PF19 | YP_004351241 (P. brassicacearum NFM421) | GTrGGAGCAAGGCTTGCCCGCGAT |
NO * | PF20 | EJM39110 (P. sp. GM33) | GTAGGAGCTGCCGAAGGCTGCGAT |
NO * | PF21 | EIM18788 (P. chlororaphis O6) | GTAGGAGCGAGGCTTGCCCGCGA |
NO * | PF22 | YP_002873800 (P. fluorescens SBW25) | GTrGTGAGCGGGCTTGCCCCGCGCT |