Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon

BMC Genomics

Table 6 BLASTN best hit (e-val < 1e-03) of A. naccarii transcriptome against non-coding RNA genes from Ensembl database

	Lamprey	Coelacanth	Danio	Stickleback	Medaka	Fugu	Tetraodon	Human
reference ncRNA (#)	2,628	2,918	4,431	1,617	735	703	813	9,399
A. naccarii ESTs with hit (#)	4	17	28	29	19	21	31	62
*A. naccarii ESTs with hit (%)*	*0.01*	*0.03*	*0.11*	*0.05*	*0.05*	*0.03*	*0.04*	*0.06*
reference ncRNA identified (#)	4	7	11	11	11	7	13	23
*reference ncRNA identified (%)*	*0.15*	*0.24*	*0.25*	*0.68*	*1.5*	1	*1.6*	*0.24*

All non-coding RNA genes and pseudogenes in Ensembl realise 66 for the different species were searched against A. naccarii transcriptome.

ISSN: 1471-2164