Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing

Zhao, Shanrong; Prenger, Kurt; Smith, Lance; Messina, Thomas; Fan, Hongtao; Jaeger, Edward; Stephens, Susan

doi:10.1186/1471-2164-14-425

BMC Genomics

Table 1 Description of the WGS data for 44 subjects and a summary of the detected SNPs

From: Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing

Sample	BAM File (GB)	FASTQ (GB)	#Reads(Millions)	Homo_SNPs^a	Hetero_SNPs^b	Het2_SNPs^c	Total_SNPs
SG1226	150	427	1900	1503239	2507716	2105	4013060
SG1227	84	269	1220	1508162	2452631	1768	3962561
SG1229	115	283	1280	1548421	2242797	1480	3792698
SG1230	111	301	1362	1494063	2581379	1906	4077348
SG1231	128	388	1740	1481840	2626852	2138	4120830
SG1232	97	258	1162	1497747	2729469	2468	4229684
SG1233	72	244	1204	1707533	2145142	1710	3854385
SG1234	103	333	1496	1550433	2790889	3233	4344555
SG1235	89	283	1258	1479108	2370792	1465	3851365
SG1236	96	311	1382	1490258	2752238	2800	4245296
SG1237	115	346	1552	1520718	2715088	2983	4238789
SG1238	102	322	1432	1504343	2327337	1457	3833137
SG1239	93	260	1170	1463430	2517434	1596	3982460
SG1240	91	251	1122	1472236	2439010	1599	3912845
SG1241	89	251	1120	1477814	2477763	1617	3957194
SG1242	97	300	1360	1501310	2470358	1856	3973524
SG1243	93	305	1356	1476636	2467669	1646	3945951
SG1244	95	269	1202	1477605	2462121	1613	3941339
SG1245	98	277	1244	1504849	2401576	1716	3908141
SG1246	97	269	1202	1496063	2474375	1747	3972185
SG1248	149	363	1632	1461303	2493556	1876	3956735
SG1249	126	382	1702	1484862	2502888	2005	3989755
SG1250	141	418	1860	1491431	2556946	2249	4050626
SG1251	144	418	1860	1507550	2516188	2161	4025899
SG1252	146	427	1918	1470888	2633297	2108	4106293
SG1253	142	432	1940	1492478	2594146	2158	4088782
SG1254	127	374	1682	1527922	2504784	1971	4034677
SG1255	138	392	1760	1472663	2622476	2130	4097269
SG1256	143	420	1872	1470631	2666175	2235	4139041
SG1257	122	381	1712	1481487	2555804	2118	4039409
SG1258	112	284	1278	1608618	2267405	1681	3877704
SG1259	124	330	1492	1463934	2661886	1991	4127811
SG1260	133	307	1382	1523274	2414508	1616	3939398
SG1263	112	349	1552	1470360	2653711	2075	4126146
SG1264	122	376	1690	1486174	2631507	2034	4119715
SG1265	101	307	1378	1489230	2495349	1800	3986379
SG1266	118	352	1576	1479540	2552931	2014	4034485
SG1267	99	310	1382	1486385	2490343	1874	3978602
SG1268	105	334	1488	1473782	3225627	2422	4701831
SG1269	114	358	1608	1512683	2477654	2043	3992380
SG1270	108	298	1340	1557762	2692982	2656	4253400
SG1271	127	388	1742	1516008	2596244	2149	4114401
SG1272	87	256	1134	1406043	2820949	1743	4228735
SG1273	183	461	1950	1488525	2393320	2188	3884033

^aHomo_SNPs are SNPs where both alleles are the same but different from the reference.
^bHetero_SNPs are SNPs where one allele is the same as the reference and the other allele is different.
^cHet2_SNPs are SNPs where both alleles are different from the reference, and different from each other.

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com