Table 1 Top 70 up-regulated contigs in initiating storage roots compared to fibrous roots
Contig | Length | ISR reads | FR reads | Fold change | Annotation |
|---|---|---|---|---|---|
S_PBL_c2971 | 936 | 3135.5 | 2.1 | 1466.5 | ABB97549.1 Sporamin A precursor [Ipomoea batatas] |
S_PBL_c9555 | 931 | 1843.7 | 2.1 | 862.3 | AAA33391.1 Sporamin A precursor |
S_PBL_c21625 | 450 | 672.6 | 1.1 | 629.1 | BAA00828.1 Beta-amylase [Ipomoea batatas] |
S_PBL_c2075 | 958 | 502.3 | 1.1 | 469.9 | not annotated |
S_PBL_c1053 | 954 | 455.5 | 1* | 455.6 | AAA33390.1 Sporamin B |
S_PBL_c54 | 918 | 2525.6 | 6.4 | 393.8 | P10917.1 Sporamin A; Flags: Precursor |
S_PBL_c17697 | 844 | 753.0 | 2.1 | 352.2 | AAB52547.1 Sporamin precursor |
S_PBL_c18468 | 263 | 311.5 | 1* | 311.5 | not annotated |
S_PBL_c15531 | 438 | 2823.1 | 11.8 | 240.1 | AAA33391.1 Sporamin A precursor |
S_PBL_c8154 | 557 | 238.5 | 1* | 238.5 | not annotated |
S_PBL_c3494 | 967 | 252.6 | 1.1 | 236.3 | AAL55800.1 Sporamin [Ipomoea batatas] |
S_PBL_c3628 | 759 | 195.5 | 1* | 195.5 | ABB90968.1 Sporamin B precursor [Ipomoea batatas] |
S_PBL_c12997 | 481 | 190.8 | 1* | 190.8 | not annotated |
S_PBL_c2027 | 1665 | 186.1 | 1.1 | 174.1 | BAA02286.1 Beta-amylase [Ipomoea batatas] |
S_PBL_lrc44407 | 487 | 158.1 | 1* | 158.1 | not annotated |
S_PBL_c25030 | 652 | 150.6 | 1* | 150.6 | XP_001677106.1 Hypothetical protein CBG16734 [Caenorhabditis briggsae AF16] |
S_PBL_c12797 | 567 | 134.7 | 1* | 134.7 | not annotated |
S_PBL_c21769 | 669 | 131.0 | 1* | 131.0 | not annotated |
S_PBL_lrc53020 | 508 | 386.3 | 3.2 | 120.5 | not annotated |
S_PBL_lrc25060 | 898 | 128.2 | 1.1 | 119.9 | CAO23244.1 unnamed protein product [Vitis vinifera] |
S_PBL_c34561 | 465 | 117.9 | 1* | 117.9 | XP_002298721.1 predicted protein [Populus trichocarpa] |
S_PBL_c9857 | 630 | 581.8 | 5.3 | 108.9 | not annotated |
S_PBL_c3428 | 1350 | 577.2 | 5.3 | 108.0 | not annotated |
S_PBL_c18337 | 561 | 1035.5 | 9.6 | 107.6 | AAX27911.1 unknown [Schistosoma japonicum] |
S_PBL_c3870 | 696 | 104.8 | 1.1 | 98.0 | ABB83474.1 Beta-expansin precursor [Solanum lycopersicum] |
S_PBL_c45358 | 560 | 96.3 | 1* | 96.3 | CAO47717.1 unnamed protein product [Vitis vinifera] |
S_PBL_c4363 | 735 | 199.2 | 2.1 | 93.2 | not annotated |
S_PBL_c20072 | 900 | 91.7 | 1* | 91.7 | P10965.1 Sporamin B; Flags: Precursor |
S_PBL_c3830 | 725 | 291.8 | 3.2 | 91.0 | EEF50674.1 conserved hypothetical protein [Ricinus communis] |
S_PBL_c7863 | 397 | 90.7 | 1* | 90.7 | not annotated |
S_PBL_lrc52376 | 494 | 189.9 | 2.1 | 88.8 | not annotated |
S_PBL_c2723 | 895 | 93.5 | 1.1 | 87.5 | CAO43166.1 unnamed protein product [Vitis vinifera] |
S_PBL_c1850 | 702 | 182.4 | 2.1 | 85.3 | not annotated |
S_PBL_c15391 | 502 | 89.8 | 1.1 | 84.0 | not annotated |
S_PBL_c26497 | 974 | 83.3 | 1* | 83.3 | XP_002327563.1 predicted protein [Populus trichocarpa] |
S_PBL_c48117 | 388 | 262.9 | 3.2 | 82.0 | P10933.1 Ferredoxin-NADP reductase, leaf isozyme, chloroplastic |
S_PBL_c20358 | 683 | 85.1 | 1.1 | 79.6 | CAO22863.1 unnamed protein product [Vitis vinifera] |
S_PBL_c3576 | 454 | 169.3 | 2.1 | 79.2 | not annotated |
S_PBL_c8690 | 813 | 75.8 | 1* | 75.8 | AAU93595.1 HVA22-like protein c, putative [Solanum demissum] |
S_PBL_c7526 | 860 | 79.5 | 1.1 | 74.4 | not annotated |
S_PBL_lrc53818 | 757 | 4080.3 | 58.8 | 69.4 | BAF47746.1 ADP-glucose pyrophosphorylase beta subunit IbAGPb1A [Ipomoea batatas] |
S_PBL_lrc52525 | 509 | 73.0 | 1.1 | 68.3 | XP_002274272.1 PREDICTED: hypothetical protein [Vitis vinifera] |
S_PBL_lrc30491 | 523 | 145.9 | 2.1 | 68.3 | P27598.1 Starch phosphorylase L |
S_PBL_c41294 | 520 | 68.3 | 1.1 | 63.9 | not annotated |
S_PBL_c32227 | 418 | 63.6 | 1* | 63.6 | not annotated |
S_PBL_c54084 | 609 | 135.6 | 2.1 | 63.4 | not annotated |
S_PBL_c31475 | 869 | 66.4 | 1.1 | 62.1 | not annotated |
S_PBL_lrc52682 | 527 | 66.4 | 1.1 | 62.1 | XP_002306992.1 predicted protein [Populus trichocarpa] |
S_PBL_c10411 | 496 | 64.5 | 1.1 | 60.4 | BAA31699.1 PKn2 [Ipomoea nil] |
S_PBL_lrc27049 | 954 | 255.4 | 4.3 | 59.7 | not annotated |
S_PBL_c14744 | 705 | 63.6 | 1.1 | 59.5 | EEF31509.1 Ubiquitin-protein ligase bre-1, putative [Ricinus communis] |
S_PBL_c18129 | 413 | 1393.8 | 23.5 | 59.3 | BAF47744.2 ADP-glucose pyrophosphorylase alpha subunit IbAGPa1 [Ipomoea batatas] |
S_PBL_c7810 | 531 | 123.5 | 2.1 | 57.8 | not annotated |
S_PBL_c14132 | 307 | 57.1 | 1* | 57.1 | not annotated |
S_PBL_c1234 | 886 | 2045.8 | 36.3 | 56.3 | BAF47746.1 ADP-glucose pyrophosphorylase beta subunit IbAGPb1A [Ipomoea batatas] |
S_PBL_c695 | 596 | 721.2 | 12.8 | 56.2 | P27598.1 Starch phosphorylase L |
S_PBL_c30129 | 726 | 56.1 | 1* | 56.1 | AAP41026.1 NTA15 protein [Nicotiana tabacum] |
S_PBL_c12308 | 666 | 115.1 | 2.1 | 53.8 | P93262.1 Phosphoglucomutase, cytoplasmic |
S_PBL_c28076 | 644 | 53.3 | 1* | 53.3 | CAO21883.1 unnamed protein product [Vitis vinifera] |
S_PBL_c16839 | 282 | 55.2 | 1.1 | 51.6 | not annotated |
S_PBL_c47419 | 537 | 55.2 | 1.1 | 51.6 | EEF50087.1 Serine-threonine protein kinase, plant-type, putative [Ricinus communis] |
S_PBL_c51126 | 492 | 661.3 | 12.8 | 51.6 | BAF47744.2 ADP-glucose pyrophosphorylase alpha subunit IbAGPa1 [Ipomoea batatas] |
S_PBL_c19033 | 878 | 51.4 | 1* | 51.4 | not annotated |
S_PBL_lrc28526 | 555 | 51.4 | 1* | 51.4 | not annotated |
S_PBL_c7145 | 689 | 161.8 | 3.2 | 50.5 | not annotated |
S_PBL_c12588 | 493 | 49.6 | 1* | 49.6 | not annotated |
S_PBL_lrc53425 | 456 | 211.4 | 4.3 | 49.4 | BAF47746.1 ADP-glucose pyrophosphorylase beta subunit IbAGPb1A [Ipomoea batatas] |
S_PBL_c21020 | 403 | 103.8 | 2.1 | 48.6 | not annotated |
S_PBL_c1397 | 989 | 408.8 | 8.6 | 47.8 | BAF47744.2 ADP-glucose pyrophosphorylase alpha subunit IbAGPa1 [Ipomoea batatas] |
S_PBL_c19766 | 429 | 984.1 | 21.4 | 46.0 | P27598.1 Starch phosphorylase L |