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Table 2 Expression, in initiating storage roots and fibrous roots, of genes involved in meristem- and cell-division regulation

From: Transcriptional profiling of sweetpotato (Ipomoea batatas) roots indicates down-regulation of lignin biosynthesis and up-regulation of starch biosynthesis at an early stage of storage root formation

Contig

Length

ISR reads

FR reads

Annotation

Meristem regulation

S_PBL_10411

496.0

64.5

1.1

BAA31699.1 PKn2 [Ipomoea nil]

S_PBL_c8137

854.0

29.0

2.1

BAF93479.1 Class-I knotted1-like homeobox protein IBKN2 [Ipomoea batatas]

S_PBL_c9098

625.0

52.4

25.7

AAO33774.1 Knotted protein TKN4 [Lycopersicon esculentum] Class I knox

S_PBL_c11762

744.0

171.2

16.0

BAF93480.1 Class-I knotted1-like homeobox protein IBKN3 [Ipomoea batatas]

S_PBL_c31412

461.0

97.3

11.8

BAF93480.1 Class-I knotted1-like homeobox protein IBKN3 [Ipomoea batatas]

S_PBL_lrc34271

455.0

2.8

44.0

BO33481.1 Class II KNOX homeobox transcription factor [Medicago truncatula]

S_PBL_c5315

807.0

30.9

25.7

BAF95776.1 Class 2 knotted1-like protein [Nicotiana tabacum]

S_PBL_c6714

747.0

6.5

3.2

ABH03531.1 Class II knotted-like homeobox protein [Prunus persica]

S_PBL_c12444

767.0

644.5

809.3

NP_197904.1 KNAT3 [Arabidopsis thaliana] Class II KNOTTED1-like homeobox gene 3

Cell division regulation

S_PBL_c25867

444.0

18.7

0.0

BAA20410.1 A-type cyclin [Catharanthus roseus]

S_PBL_c32270

712.0

42.1

5.3

AAV41032.1 Cyclin D-like protein [Nicotiana tabacum]

S_PBL_c29324

408.0

213.3

336.7

EEF32676.1 Cyclin-L2, putative [Ricinus communis]

S_PBL_c3050

747.0

141.2

100.5

AAR01224.1 Cyclin T1 [Medicago truncatula]

S_PBL_c1272

1042.0

530.4

108.0

BAE06268.1 Cyclin-dependent kinase A1 [Scutellaria baicalensis]

S_PBL_c1655

489.0

44.9

3.2

EEF38677.1 Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]

S_PBL_c33143

467.0

35.5

6.4

AAG01532.1 Cyclin-dependent kinase B1-1 [Nicotiana tabacum]

S_PBL_c27090

768.0

112.3

54.5

CAC51391.1 Cyclin dependent kinase C [Solanum lycopersicum]

S_PBL_c28094

482.0

81.4

11.8

ABN58480.1 Cyclin-dependent kinase [Actinidia chinensis]

  1. Expression is given as the normalized number of reads derived from the Illumina sequencing data as detailed in ‘Methods’. ISR, Initiating storage root, FR, Fibrous root.