Table 5 Read count of contigs representing enzymes of the phenylpropanoid biosynthesis pathway in initiating storage roots and fibrous roots
Enzyme/contigs | ISR reads | FR reads |
|---|---|---|
phenylalanine ammonia-lyase (PAL; EC 4.3.1.24) | Â | Â |
S_PBL_c14873 | 230.1 | 3407.1 |
S_PBL_c18 | 905.5 | 11467.6 |
S_PBL_c18502 | 387.3 | 2829.8 |
S_PBL_2066 | 521.0 | 7128.4 |
S_PBL_21573 | 17.8 | 54.5 |
S_PBL_2312 | 344.2 | 3051.1 |
trans-cinnamate 4-monooxygenase (C4H; EC 1.14.13.11) | Â | Â |
S_PBL_lrc53776 | 125.3 | 2954.8 |
S_PBL_lrc53138 | 10.3 | 116.5 |
S_PBL_lrc53079 | 262.9 | 1090.4 |
S_PBL_lrc52110 | 345.2 | 6252.8 |
S_PBL_c98 | 434.0 | 4534.9 |
S_PBL_c2889 | 391.0 | 9808.5 |
S_PBL_c22453 | 285.3 | 1095.8 |
S_PBL_c18141 | 154.3 | 2287.8 |
S_PBL_c17334 | 707.2 | 2703.6 |
4-coumarate-CoA ligase (4CL; EC 6.2.1.12) | Â | Â |
S_PBL_c4746 | 63.6 | 421.2 |
S_PBL_c24867 | 50.5 | 162.5 |
S_PBL_c22722 | 70.2 | 388.1 |
S_PBL_c21439 | 56.1 | 305.7 |
S_PBL_c18044 | 29.9 | 379.5 |
S_PBL_c158 | 119.7 | 1904.0 |
S_PBL_c1395 | 52.4 | 149.7 |
S_PBL_c13368 | 18.7 | 56.7 |
quinate O-hydroxycinnamoyltransferase (EC 2.3.1.99) | Â | Â |
S_PBL_c20232 | 8.4 | 90.9 |
shikimate O-hydroxycinnamoyltransferase (HCT; EC 2.3.1.133) | Â | Â |
S_PBL_c8321 | 185.2 | 789.0 |
S_PBL_c657 | 3.7 | 93.0 |
S_PBL_c6051 | 58.0 | 346.4 |
S_PBL_c20232 | 8.4 | 90.9 |
S_PBL_c20009 | 85.1 | 1152.4 |
S_PBL_c17752 | 33.7 | 318.6 |
S_PBL_c15462 | 13.1 | 43.8 |
caffeoyl-CoA O-methyltransferase (CCoAOMT; EC 2.1.1.104) | Â | Â |
S_PBL_c6206 | 218.0 | 645.7 |
S_PBL_c3822 | 73.9 | 811.4 |
S_PBL_c2944 | 389.1 | 1204.8 |
S_PBL_c20480 | 148.7 | 1188.8 |
S_PBL_c12810 | 89.8 | 916.2 |
S_PBL_c30794 | 50.5 | 4.3 |
cinnamoyl-CoA reductase (CCR; EC 1.2.1.44) | Â | Â |
S_PBL_c8128 | 116.9 | 330.3 |
S_PBL_c5810 | 10499.1 | 30368.4 |
S_PBL_c2607 | 219.8 | 988.9 |
S_PBL_c21123 | 86.1 | 495.0 |
S_PBL_c19132 | 27.1 | 164.6 |
S_PBL_c10515 | 42.1 | 10.7 |
caffeate O-methyltransferase (COMT; EC 2.1.1.68) | Â | Â |
S_PBL_c978 | 98.2 | 405.2 |
S_PBL_c538 | 26.2 | 327.1 |
S_PBL_c20536 | 2.8 | 20.3 |
S_PBL_c29777 | 78.6 | 15.0 |
cinnamyl-alcohol dehydrogenase (CAD; EC 1.1.1.195) | Â | Â |
S_PBL_lrc54926 | 37.4 | 95.1 |
S_PBL_lrc54183 | 23.4 | 136.8 |
S_PBL_lrc53688 | 632.3 | 8881.6 |
S_PBL_lrc53173 | 17.8 | 96.2 |
S_PBL_lrc52706 | 599.6 | 2211.9 |
S_PBL_lrc52587 | 355.5 | 2451.3 |
S_PBL_lrc26619 | 6.5 | 21.4 |
S_PBL_c8094 | 178.7 | 1763.9 |
S_PBL_c27372 | 114.1 | 351.7 |
S_PBL_c22346 | 11.2 | 49.2 |
S_PBL_c21896 | 27.1 | 161.4 |
S_PBL_c21084 | 474.3 | 4448.3 |
S_PBL_c18369 | 225.4 | 776.1 |
S_PBL_c17373 | 29.0 | 139.0 |
S_PBL_c12615 | 328.3 | 2762.4 |
S_PBL_c20863 | 186.1 | 18.2 |
S_PBL_c17269 | 509.8 | 160.4 |
beta-glucosidase (EC 3.2.1.21) | Â | Â |
S_PBL_c6163 | 4.7 | 13.9 |
S_PBL_c41088 | 0.9 | 35.3 |
S_PBL_c29128 | 1.9 | 63.1 |
S_PBL_c25813 | 39.3 | 101.6 |
S_PBL_c12164 | 62.7 | 374.2 |
S_PBL_c13042 | 12.2 | 3.2 |
S_PBL_c23506 | 64.5 | 2.1 |
S_PBL_c7311 | 353.6 | 127.2 |
S_PBL_c25672 | 55.2 | 8.6 |
S_PBL_c11889 | 156.2 | 44.9 |
S_PBL_c50698 | 50.5 | 4.3 |
S_PBL_c27348 | 74.8 | 23.5 |
peroxidase (EC 1.11.1.7) | Â | Â |
S_PBL_lrc55044 | 107.6 | 314.3 |
S_PBL_lrc54488 | 8.4 | 81.2 |
S_PBL_lrc54403 | 413.5 | 1216.6 |
S_PBL_lrc54045 | 769.8 | 1999.1 |
S_PBL_lrc53204 | 427.5 | 1603.6 |
S_PBL_lrc53085 | 334.9 | 1066.9 |
S_PBL_lrc52151 | 4.7 | 24.6 |
S_PBL_c8312 | 44.9 | 1339.5 |
S_PBL_c750 | 82.3 | 267.3 |
S_PBL_c6142 | 1.9 | 275.8 |
S_PBL_c5935 | 2.8 | 23.5 |
S_PBL_c5844 | 586.5 | 2139.2 |
S_PBL_c4994 | 61.7 | 609.4 |
S_PBL_c48762 | 40.2 | 985.7 |
S_PBL_c44935 | 2.8 | 13.9 |
S_PBL_c39736 | 11.2 | 40.6 |
S_PBL_c34320 | 2.8 | 65.2 |
S_PBL_c29852 | 223.6 | 602.9 |
S_PBL_c29801 | 24.3 | 215.9 |
S_PBL_c29652 | 0.9 | 151.8 |
S_PBL_c2946 | 92.6 | 280.1 |
S_PBL_c22233 | 5.6 | 22.4 |
S_PBL_c22191 | 5.6 | 20.3 |
S_PBL_c2122 | 629.5 | 1831.3 |
S_PBL_c21120 | 1.9 | 88.7 |
S_PBL_c18854 | 25.3 | 93.0 |
S_PBL_c1825 | 22.4 | 182.8 |
S_PBL_c16766 | 14.0 | 60.9 |
S_PBL_c1640 | 39.3 | 2253.6 |
S_PBL_c15871 | 156.2 | 1221.9 |
S_PBL_c12624 | 42.1 | 143.3 |
S_PBL_c11598 | 79.5 | 299.3 |
S_PBL_c11410 | 97.3 | 457.6 |
S_PBL_c14485 | 116.9 | 32.1 |
S_PBL_c15642 | 66.4 | 9.6 |
S_PBL_c7505 | 95.4 | 32.1 |
S_PBL_c2035 | 1005.6 | 360.3 |
S_PBL_c11972 | 18.7 | 4.3 |
S_PBL_lrc54799 | 75.8 | 29.9 |
S_PBL_c4878 | 34.6 | 1.1 |
S_PBL_c4857 | 549.1 | 97.3 |
S_PBL_c10185 | 100.1 | 31.0 |
S_PBL_c17430 | 18.7 | 3.2 |
S_PBL_lrc54785 | 52.4 | 8.6 |
coniferyl-alcohol glucosyltransferase (EC 2.4.1.111) | Â | Â |
S_PBL_c1688 | 61.7 | 420.1 |
S_PBL_c16389 | 61.7 | 1024.2 |
S_PBL_c13307 | 580.9 | 4191.7 |
coniferin beta-glucosidase (EC 3.2.1.126) | Â | Â |
S_PBL_c25672 | 55.2 | 8.6 |