Overview | ASU | NCBI | Ensembl |
---|---|---|---|
Annotated genes | 22,962 | 15,645 | 17,792 |
Annotated transcript isoforms | 59,373 | 16,533 | 18,939 |
Annotated isoforms/gene | 2.59 | 1.06 | 1.06 |
Annotated Transcripts | |||
All transcript isoforms | 59,373 | 16,533 | 18,939 |
Transcripts with start & stop codons | 53,401 | 14,667 | 4,170 |
Transcripts missing start or stop codon | 5,972 | 1,866 | 14,769 |
Single exon transcripts | 2,070 | 983 | 364 |
Transcript N50 length | 5,355 | 2,364 | 2,037 |
Average coding sequence length | 1,964 | 1,701 | 1,531 |
Exons | |||
Total number of exons | 229,204 | 156,742 | 174,545 |
Exons with start with codon | 29,677 | 13,512 | 5,971 |
Exons without start or stop codon | 168,367 | 128,486 | 158,935 |
Exons with stop codon | 29,727 | 13,779 | 9,278 |
Exons/annotated transcript | 12.05 | 10.11 | 9.62 |
Average exon length | 170 | 170 | 160 |
Total exon length | 38,902,806 | 26,658,387 | 27,910,718 |
3' UTR | |||
Total transcripts with 3'UTR | 34,926 | 5,861 | 0 |
Average length of transcripts with 3'UTR | 1,168 | 456 | 0 |
Total 3'UTR sequence length | 40,798,794 | 2,674,388 | 0 |
5' UTR | |||
Total transcripts with 5'UTR | 46,782 | 6,168 | 0 |
Average length of transcripts with 5'UTR | 244 | 86 | 0 |
Total 5'UTR sequence length | 11,422,626 | 527,454 | 0 |
Introns | |||
Total number of introns | 192,418 | 141,362 | 155,949 |
Average intron length | 4,525 | 4,463 | 2,553 |
Total intron sequence length | 870,771,088 | 630,937,171 | 398,124,572 |