From: Reductive evolution and the loss of PDC/PAS domains from the genus Staphylococcus
Speciesa | Subspecies/strain | Accession number | Phylum | Pathogenicityb | Motilityc | Total proteinsd | PDC/PAS proteinse | PAS domainsf | PDC domainsg |
---|---|---|---|---|---|---|---|---|---|
[Gram positive] | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Bifidobacterium animalis | lactis AD011 | NC_011835.1 | Actinobacteria | 0 | 0 | 1527 | 5 | 4 | 2 |
Corynebacterium diphtheriae (Ci) | NCTC 13129 | NC_002935.2 | Actinobacteria | 1 | 0 | 2272 | 4 | 2 | 2 |
Corynebacterium glutamicum (Cg) | ATCC 13032 | NC_006958.1 | Actinobacteria | 0 | 0 | 3057 | 7 | 5 | 4 |
Micrococcus luteus (Ml) | NCTC 2665 | NC_012803.1 | Actinobacteria | 0 | 0 | 2236 | 5 | 4 | 3 |
Mycobacterium leprae | TN | NC_002677.1 | Actinobacteria | 1 | 0 | 1605 | 6 | 7 | 1 |
Mycobacterium smegmatis (Ms) | MC2 155 | NC_008596.1 | Actinobacteria | 0 | 0 | 6717 | 20 | 17 | 10 |
Mycobacterium tuberculosis (Mt) | CDC1551 | NC_002755.2 | Actinobacteria | 1 | 0 | 4189 | 10 | 6 | 7 |
Streptomyces coelicolor (Stc) | A3(2) | NC_003888.3 | Actinobacteria | 0 | 0 | 8154 | 51 | 48 | 18 |
Bacillus anthracis (Ba) | CDC 684 | NC_012581.1 | Firmicutes | 1 | 0 | 5902 | 43 | 30 | 30 |
Bacillus cereus (Bc) | ATCC 10987 | NC_003909.8 | Firmicutes | 1 | 1 | 5843 | 41 | 30 | 25 |
Bacillus megaterium (Bm) | QM B1551 | NC_010010.2 | Firmicutes | 0 | 1 | 5612 | 53 | 57 | 21 |
Bacillus subtilis (Bs) | subtilis 168 | NC_000964.3 | Firmicutes | 0 | 1 | 4176 | 32 | 21 | 30 |
Clostridium acetobutylicum (Ca) | ATCC 824 | NC_003030.1 | Firmicutes | 0 | 1 | 3847 | 36 | 16 | 34 |
Clostridium botulinum | A str. ATCC 3502 | NC_009496.1 | Firmicutes | 1 | 1 | 3590 | 48 | 31 | 40 |
Clostridium difficile (Cd) | 630 | NC_009089.1 | Firmicutes | 1 | 1 | 3749 | 49 | 49 | 26 |
Enterococcus faecalis (Efs) | V583 | NC_004668.1 | Firmicutes | 1 | 0 | 3264 | 9 | 7 | 7 |
Enterococcus faecium (Efm) | DO | NZ_AAAK00000000 | Firmicutes | 1 | 0 | 3114 | 9 | 3 | 10 |
Lactobacillus casei (Lc) | ATCC 334 | NC_008526.1 | Firmicutes | 0 | 0 | 2768 | 8 | 6 | 4 |
Lactococcus lactis (Ll) | cremoris MG1363 | NC_009004.1 | Firmicutes | 0 | 0 | 2434 | 5 | 5 | 0 |
Listeria monocytogenes (Lm) | EGD-e | NP_463535.1 | Firmicutes | 1 | 1 | 2846 | 12 | 9 | 7 |
Macrococcus caseolyticus (Mc) | JCSC5402 | NC_011999.1 | Firmicutes | 0 | 0 | 2052 | 7 | 6 | 4 |
Staphylococcus aureus (SaU) | aureus USA300_TCH1516 | NC_010079.1 | Firmicutes | 1 | 0 | 2693 | 8 | 5 | 7 |
Staphylococcus aureus (SaC) | aureus COL | NC_002951.2 | Firmicutes | 1 | 0 | 2612 | 8 | 5 | 7 |
Staphylococcus carnosus (Sc) | carnosus TM300 | NC_012121.1 | Firmicutes | 0 | 0 | 2461 | 9 | 8 | 5 |
Staphylococcus epidermidis (Se) | ATCC 12228 | NC_004461.1 | Firmicutes | 1 | 0 | 2416 | 8 | 5 | 7 |
Staphylococcus haemolyticus (Sh) | JCSC1435 | NC_007168.1 | Firmicutes | 1 | 0 | 2676 | 7 | 5 | 4h |
Staphylococcus lugdunensis (Sl) | HKU09-01 | CP_001837.1 | Firmicutes | 1 | 0 | 2490 | 7 | 5 | 5 |
Staphylococcus pseudintermedius (Sp) | HKU10-03 | NC_014925.1 | Firmicutes | 1 | 0 | 2450 | 8 | 5 | 7 |
Staphylococcus saprophyticus (Ss) | saprophyticus ATCC15305 | NC_007350.1 | Firmicutes | 1 | 0 | 2446 | 6 | 4 | 5 |
Streptococcus agalactiae | 2603Â V/R | NC_004116.1 | Firmicutes | 1 | 0 | 2124 | 11 | 6 | 7 |
Streptococcus pneumoniae (Spn) | D39 | NC_008533.1 | Firmicutes | 1 | 0 | 1914 | 8 | 5 | 4 |
Streptococcus pyogenes (Spy) | MGAS10270 | NC_008022.1 | Firmicutes | 1 | 0 | 1986 | 11 | 4 | 10 |
[Gram negative] | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Nostoc punctiforme | PCC 73102 | NC_010628.1 | Cyanobacteria | 0 | 1 | 6689 | 97 | 131 | 38 |
Synechococcus sp | CC9311 | NC_008319.1 | Cyanobacteria | 0 | 1 | 2892 | 12 | 8 | 6 |
Agrobacterium tumefaciens | C58 | NC_003062.2 | Proteobacteria | 0 | 1 | 5355 | 63 | 61 | 27 |
Bartonella henselae | Houston-1 | NC_005956.1 | Proteobacteria | 1 | 0 | 1488 | 8 | 10 | 2 |
Bradyrhizobium sp | BTAi1 | NC_009485.1 | Proteobacteria | 0 | 1 | 7621 | 98 | 103 | 51 |
Escherichia coli (Ec) | K-12 substr. MG1655 | NC_000913.2 | Proteobacteria | 0 | 1 | 4146 | 32 | 24 | 18 |
Helicobacter pylori | 83 | CP002605.1 | Proteobacteria | 1 | 1 | 1609 | 5 | 1 | 7 |
Klebsiella pneumoniae (Kp) | 342 | NC_011283.1 | Proteobacteria | 1 | 0 | 5768 | 33 | 24 | 18 |
Neisseria meningitidis | MC58 | NC_003112.1 | Proteobacteria | 1 | 0 | 2063 | 3 | 2 | 1 |
Pseudomonas aeruginosa | PAO1 | NC_002516.1 | Proteobacteria | 1 | 1 | 5571 | 70 | 71 | 35 |
Salmonella enterica | arizonae serovar | NC_010067.1 | Proteobacteria | 1 | 1 | 4500 | 21 | 12 | 13 |
Shigella flexneri | 2a str. 2457Â T | NC_004741.1 | Proteobacteria | 1 | 0 | 4060 | 18 | 11 | 9 |
Vibrio cholerae | MJ-1236 | NC_012668.1 | Proteobacteria | 1 | 1 | 3772 | 71 | 42 | 59 |
Yersinia pestis | CO92 | NC_003143.1 | Proteobacteria | 1 | 1 | 4066 | 20 | 10 | 13 |
Leptospira biflexa | serovar Patoc | CP000788.1 | Spirochaetes | 0 | 1 | 3726 | 67 | 76 | 30 |
Treponema pallidum | pallidum SS14 | CP000805.1 | Spirochaetes | 1 | 1 | 1028 | 5 | 1 | 6 |