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Table 1 Hsp90 genes families in Arabidopsis , Populus , and rice

From: Genome-wide analysis of the Populus Hsp90 gene family reveals differential expression patterns, localization, and heat stress responses

Gene name

Locus

Genomic position

Mol. Wt. (kDa), Length (aa), pI

Gene length, ORF, introns

POSRT predictions*

AtHsp90-1

At5g52640

Chr5:21352542-21355147 (+)

81.18, 705, 4.95

2606, 2118, 3

N: 6, C: 5, Ch: 2

AtHsp90-2

At5g56030

Chr5:22686923-22689433 (+)

80.06, 699, 4.95

2511, 2187, 2

C: 11, P: 2

AtHsp90-3

At5g56010

Chr5:22681410-22683911 (+)

80.05, 699, 4.95

2502, 2100, 2

C: 9, P: 2, N: 1, M: 1

AtHsp90-4

At5g56000

Chr5:22677602-22680067 (-)

80.14, 699, 4.96

2466, 2100, 2

C: 9, P: 4

AtHsp90-5

At2g04030

Chr2:1281983-1285909 (+)

88.66, 780, 4.93

3927, 2343, 18

Ch: 12, N: 1

AtHsp90-6

At3g07770

Chr3:2479611-2483970 (+)

90.57, 799, 5.26

4360, 2400, 19

M: 9.5, Ch_M: 6.5, Ch: 2.5

AtHsp90-7

At4g24190

Chr4:12551902-12555851 (-)

94.2, 823, 4.94

3950, 2472, 14

E.R.: 7, V: 4, N: 1

PtHsp90-1a

Potri.004G073600

Chr04: 6143799 - 6146941(-)

80.72, 703, 5

2566, 2112, 3

C: 7, N: 3, P: 2, M: 1

PtHsp90-1b

Potri.017G146600

Chr17: 15369800 - 15373207(+)

80.75, 703, 4.98

2696, 2112, 3

C: 8, N: 2, P: 2, M: 1

PtHsp90-2

Potri.001G466000

Chr01: 49936276 - 49939430(+)

80.03, 699, 4.95

2767, 2100, 2

C: 6, P: 2, E.R.: 2, Ch: 1, N: 1, M: 1

PtHsp90-3

Potri.016G003400

Chr16: 167702 - 171110(+)

79.95, 698, 4.94

2906, 2097, 3

N: 7, C: 5, Ch: 2

PtHsp90-4a

Potri.001G286700

Chr01: 29295547 - 29298729(+)

80.86, 706, 4.88

2734, 2121, 2

C: 7, N: 2, P: 2, Ch: 1, M: 1

PtHsp90-4b

Potri.006G002800

Chr06: 219117 - 222439(+)

80.01, 699, 4.91

2734, 2100, 2

N: 4, C: 4, P: 3, Ch: 1, V: 1

PtHsp90-5a

Potri.008G112700

Chr08: 7190800 - 7197203(+)

90.16, 791, 4.92

5884, 2376, 17

Ch: 10, N: 2, P: 1

PtHsp90-5b

Potri.010G136800

Chr10: 15004039 - 15010595(-)

90.15, 793, 4.96

5723, 2382, 17

Ch: 13

PtHsp90-6

Potri.014G164900

Chr14: 13043761 - 13049852(-)

82.95, 723, 5.53

4850, 2172, 13

M: 7.5, Ch_M: 7, Ch: 5.5

PtHsp90-7

Potri.005G241100

Chr05: 24712685 - 24717968(-)

94.05, 823, 4.85

4926, 2472, 14

E.R.: 5, V: 5, P: 2, Ch: 1

OsHsp90-1

LOC_Os04g01740

Chr4: 483241 - 486065 (+)

80.25, 703, 5.04

2353, 2112, 2

C: 11, Ch: 1, P: 1

OsHsp90-2

LOC_Os08g39140

Chr8: 24719086 - 24723553 (-)

80.19, 699, 4.99

4002, 2100, 2

C: 8, P: 2, Ch: 1, N: 1, M: 1

OsHsp90-3

LOC_Os09g30412

Chr9: 18514572 - 18518316 (-)

80.2, 699, 4.97

3232, 2100, 2

N: 7, C: 4, Ch: 2

OsHsp90-4

LOC_Os09g30418

Chr9: 18535746 - 18541109 (-)

94.2, 830, 5.15

5364, 2493, 3

N: 8, C: 3, Ch: 1, P: 1

OsHsp90-5a

LOC_Os08g38086

Chr8: 24124838 - 24129488 (-)

85.85, 761, 4.97

4285, 2286, 19

Ch: 12.5, Ch_M: 7

OsHsp90-5b

LOC_Os09g29840

Chr9: 18150618 - 18155512 (-)

89.22, 791, 5.03

4359, 2376, 18

Ch: 12.5, Ch_M: 7

OsHsp90-6

LOC_Os12g32986

Chr12: 19921576 - 19927766 (-)

91.48, 811, 5.21

5680, 2436, 19

Ch: 12, M: 1

OsHsp90-7

LOC_Os06g50300

Chr6: 30444411 - 30450497 (-)

93.04, 812, 4.89

5669, 2439, 14

E.R.: 5, V: 5, P: 2, Ch: 1

  1. Gene loci are obtained from the Phytozome website (http://www.phytozome.net). A complete list of the coding sequences (CDS), deduced amino acid sequences and genomic DNA sequences is available in Additional file 2.
  2. *PSORT predictions: P (plasma membrane), V (vacuolar membrane), C (cytosol), Ch (chloroplast), N (nuclear), E.R. (endoplasmic reticulum), M (mitochondrion). The numbers indicate the number of nearest neighbors to the query which localize to each site.