Figure 2
From: Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals
Contig length improvement after using CAP3. N50 (50% of the length of the assembled sequences) is a parameter to assess the contig length distribution (A) Fav1 contig length and N-values relationship. The thin lines represent the values for k-mer 35, 39, 45. The N50 length values were 1027, 1009, 949Â bp, respectively. The line with cross represents the N-values after using CAP3, with N50 length of 1665. (B) Fav2 contig length and N-values relationship. The N50 length values for k-mer 39, 45, 49 were 453, 408, 391Â bp, respectively. The N50 length values for k-mer 29, 31, 35 were 742, 734, 721Â bp, respectively. The line with cross represents the N-values after using CAP3, with the N50 length of 1439Â bp.