From: Global transcriptional response of Caulobacter crescentus to iron availability
Gene CB15 | Gene NA1000 | Predicted functiona | Fold changeb | |
---|---|---|---|---|
WT DP/WT Fe | ∆fur Fe/WT Fe | |||
Transport | ||||
CC_0026 | CCNA_00026 | PAS-family sensor histidine kinase (heme) | 4.70 | 5.95 |
CC_0027 | CCNA_00027 | PKHD-type hydroxylase (FeII) | 15.65 | 26.39 |
CC_0028c | CCNA_00028 | TonB-dependent receptor | 28.27 | 55.08 |
CC_0029 | CCNA_00029 | Lysine exporter protein | 2.18 | 2.03 |
CC_0139 | CCNA_00138 | TonB-dependent receptor | 20.21 | 33.27 |
CC_0683 | CCNA_00719 | Type I secretion adaptor protein hlyD | 2.42 | 2.81 |
CC_0684 | CCNA_00720 | Type I protein secretion ATP-binding protein | 2.25 | 2.80 |
CC_0711 | CCNA_00748 | Ferrous iron transport protein A | 9.10 | 9.04 |
CC_0712 | CCNA_00749 | Ferrous iron transport protein B | 6.13 | 5.96 |
CC_2191 | CCNA_02272 | Hypothetical protein | 4.49 | 7.10 |
CC_2192 | CCNA_02273 | Glutathione peroxidase (DUF3297) | 6.27 | 9.09 |
CC_2193 | CCNA_02274/75 | EF hand protein/hypothetical protein (DUF4198) | 64.82 | 167.73 |
CC_2194 | CCNA_02277 | Hemin receptor (TonB-dependent receptor) | 17.90 | 25.29 |
CC_2195 | CCNA_02278 | Putative membrane-associated alkaline phosphatase | 4.49 | 7.27 |
CC_2196 | CCNA_02279 | Disulfide bond formation protein B | 2.51 | 3.17 |
CC_2197 | CCNA_02280 | Ubiquinone biosynthesis protein COQ7 (Iron) | 2.52 | 3.23 |
CC_2927 | CCNA_03022 | Transporter | 27.09 | 34.54 |
CC_2928 | CCNA_03023 | TonB-dependent receptor | 15.36 | 22.72 |
CC_3059 | CCNA_03155 | Transporter | 23.57 | 22.29 |
CC_3060 | CCNA_03156 | Putative periplasmic protein (DUF2271) | 24.53 | 32.44 |
CC_3061 | CCNA_03157 | Putative membrane spanning protein (DUF4198) | 44.13 | 51.11 |
CC_3062 | CCNA_03158 | Iron-sulfur cluster assembly/repair protein ApbE | 17.44 | 24.66 |
CC_3063 | CCNA_03159 | Sulfite reductase (NADPH) flavoprotein (Heme) | 12.25 | 16.47 |
CC_3693 | CCNA_03807 | Organic solvent resistance transport system Ttg2D protein | 6.48 | 2.50 |
CC_3694 | CCNA_03808 | Organic solvent resistance transport system Ttg2C protein | 5.62 | 2.19 |
Riboflavin biosynthesis | ||||
CC_0885 | CCNA_00929 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase | 10.83 | 4.99 |
CC_0886 | CCNA_00930 | Riboflavin synthase alpha chain | 8.01 | 3.57 |
CC_0887 | CCNA_00931 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | 12.18 | 3.70 |
CC_0888 | CCNA_00932 | 6,7-dimethyl-8-ribityllumazine synthase | 13.72 | 4.33 |
CC_0889 | CCNA_00933 | Putative peptidase | 5.75 | 3.08 |
Miscellaneous | ||||
CC_0220 | CCNA_00220 | Thiol-disulfide isomerase and thioredoxin | 3.80 | 3.31 |
CC_0884 | CCNA_00928 | Transcriptional regulator, GntR family | 5.16 | 2.45 |
CC_1968 | CCNA_02046 | Nitrogen regulatory protein P-II GlnB | 2.87 | 3.45 |
CC_1969 | CCNA_02047 | Glutamine synthetase GlnA | 2.32 | 2.33 |
CC_3263 | CCNA_03372 | Bacterioferritin-associated ferredoxin (Fe-S cluster) | 56.96 | 40.04 |
Hypothetical | ||||
CC_0155 | CCNA_00154 | Hypothetical protein DUF2061 (predicted membrane) | 13.07 | 5.99 |
CC_0681 | unannotated | Hypothetical protein | 7.97 | 3.77 |
CC_0682 | unannotated | Hypothetical protein | 10.03 | 3.88 |
CC_0719 | CCNA_00756 | Hypothetical protein | 9.81 | 2.89 |
CC_2367 | CCNA_02452 | Hypothetical protein | 23.64 | 26.74 |
CC_2904 | CCNA_02998 | Hypothetical protein | 9.64 | 13.35 |
CC_3452 | CCNA_03566 | Hypothetical protein | 2.52 | 2.51 |