From: Global transcriptional response of Caulobacter crescentus to iron availability
Gene CB15 | Gene NA1000 | Predicted function | Fold changea |
---|---|---|---|
Amino acid metabolism | |||
CC_0013 | CCNA_00013 | Protein-PII uridylyltransferase GlnD | 2.62 |
CC_0272 | CCNA_00273 | Peptide deformylase (FeII) | 2.81 |
CC_0977b | CCNA_01028 | Cytosol aminopeptidase (Zinc or Manganese) | 4.62 |
CC_1612 | CCNA_01684 | Phenylalanine-4-hydroxylase (Iron) | 2.33 |
CC_2481b | CCNA_02566 | Membrane alanine aminopeptidase (Zinc) | 2.90 |
CC_2532 | CCNA_02615 | Homogentisate 1,2-dioxygenase (Iron) | 2.38 |
CC_2533 | CCNA_02616 | 4-hydroxyphenylpyruvate dioxygenase (Iron) | 2.49 |
CC_3686 | CCNA_03800 | Diaminopimelate epimerase | 2.25 |
Iron-sulfur cluster assembly/repair | |||
CC_0061 | CCNA_00059 | Oxygen-insensitive NADH nitroreductase | 3.31 |
CC_0062 | CCNA_00060 | Mitochondrial-type Fe-S cluster assembly protein NFU | 4.60 |
CC_0132b | CCNA_00131 | Rrf2 family protein | 3.30 |
CC_1857 | CCNA_01933 | Hypothetical protein | 5.66 |
CC_1858 | CCNA_01934 | HesB protein family | 5.66 |
CC_1859 | CCNA_01935 | FeS assembly SUF system protein | 5.50 |
CC_1860 | CCNA_01936 | Cysteine desulfurase/Selenocysteine lyase | 7.58 |
CC_1861 | CCNA_01937 | SufD protein | 5.90 |
CC_1862 | CCNA_01938 | ATP-dependent transporter sufC | 7.89 |
CC_1863 | CCNA_01939 | ADP-ribosylglycohydrolase | 8.30 |
CC_1864 | CCNA_01940 | ABC transporter-associated protein sufB | 7.81 |
CC_1865 | CCNA_01941 | Cysteine desulfhydrase/Selenocysteine lyase | 7.09 |
CC_1866b | CCNA_01942 | Rrf2 family transcriptional regulator | 7.98 |
Oxidative stress | |||
CC_0141 | CCNA_00140 | Glutathione synthetase | 2.55 |
CC_0993 | CCNA_01045 | Conserved hypothetical cytosolic protein (DUF419) | 2.84 |
CC_0994b | CCNA_01046 | Peptide methionine sulfoxide reductase msrA | 3.07 |
CC_1315 | CCNA_01375 | Lactoylglutathione lyase | 2.97 |
CC_1316b | CCNA_01376 | Glutathione S-transferase | 3.93 |
Heat shock response | |||
CC_0685 | CCNA_00721 | Chaperonin GroEL | 2.33 |
CC_0686b | CCNA_00722 | Co-chaperonin GroES | 2.27 |
CC_0878 | CCNA_00922 | ClpB protein | 2.71 |
CC_2258 | CCNA_02341 | Small heat shock protein | 5.50 |
CC_2467 | CCNA_02552 | ATP-dependent Clp protease adaptor protein ClpS | 2.42 |
CC_2468 | CCNA_02553 | ATP-dependent clp protease ATP-binding subunit ClpA | 2.63 |
CC_2509 | CCNA_02594 | Endopeptidase htpX | 8.09 |
CC_2510b | CCNA_02595 | Hypothetical protein | 8.94 |
CC_3098b | CCNA_03195 | RNA polymerase sigma factor RpoH | 5.16 |
CC_3592b | CCNA_03706 | Small heat shock protein | 3.42 |
CC_3727b | CCNA_03843 | ATP-dependent endopeptidase hsl proteolytic subunit hslV | 3.48 |
CC_3728 | CCNA_03844 | ATP-dependent endopeptidase hsl ATP-binding subunit hslU | 2.49 |
Detoxification/Resistance | |||
CC_0321 | CCNA_00323 | Low-affinity zinc transport protein | 2.80 |
CC_0807 | CCNA_00850 | Cation/multidrug efflux pump acrB2 | 4.59 |
CC_0808 | CCNA_00851 | Periplasmic multidrug efflux lipoprotein precursor | 4.14 |
CC_3195b | CCNA_03299 | Outer membrane protein oprM | 3.32 |
CC_3197 | CCNA_03301 | Cation/multidrug efflux pump acrB | 2.70 |
CC_3443 | CCNA_03556 | Quaternary ammonium compound-resistance protein | 2.34 |
CC_3681b | CCNA_03795 | Tellurium resistance protein terB | 4.33 |
DNA metabolism | |||
CC_0260 | CCNA_00261 | Ribonucleoside-diphosphate reductase beta chain (Iron) | 2.79 |
CC_2229 | CCNA_02312 | SLA2 protein (TraB family) | 2.64 |
CC_2590 | CCNA_02673 | Excinuclease ABC subunit A | 2.22 |
CC_3492 | CCNA_03607 | Ribonucleoside-diphosphate reductase alpha chain (Iron) | 3.51 |
Miscellaneous | |||
CC_0653 | CCNA_00690 | CarD-like transcriptional regulator | 2.14 |
CC_0679 | CCNA_00718 | Abortive infection protein | 2.52 |
CC_0827 | CCNA_00870 | Putative cytosolic protein (DUF1178) | 2.77 |
CC_0883 | CCNA_00927 | Hypothetical protein | 3.65 |
CC_2018 | CCNA_02097 | Periplasmic glucan glucosyltransferase | 2.11 |
CC_2129 | CCNA_02213 | NADH dehydrogenase (Fe-S cluster) | 3.60 |
CC_2506 | CCNA_02592 | Thioesterase | 2.48 |
CC_2653b | CCNA_02736 | Nitroreductase family | 3.37 |
CC_2659 | CCNA_02742 | Oxalate/formate antiporter (MSF transporter) | 3.11 |
CC_2926c | CCNA_03021 | Hypothetical protein | 4.14 |
CC_3002 | CCNA_03097 | Aldo/keto reductase family protein | 4.69 |
CC_3019 | CCNA_03113 | Membrane-associated phospholipid phosphatase | 3.48 |
CC_3385b | CCNA_03496 | Putative cytosolic protein (DUF328) | 2.96 |
CC_3406 | CCNA_03517 | Cytochrome c oxidase polypeptide I coxA | 2.32 |
CC_3692c | CCNA_03806 | Outer membrane lipoprotein | 11.60 |
CC_3695c | CCNA_03809 | Organic solvent resistance transport system permease | 4.68 |
CC_3696c | CCNA_03810 | Organic solvent resistance transport system ATP-binding protein | 4.81 |