Feature | Value |
---|---|
Helianthus samples sequenced: | 6 |
Total number of SNP variants identified: | 105662 |
Total possible SNP genotypes in population: | 633972 |
SNP genotypes with high confidence call: | 502837 (79.3%) |
SNP genotypes with missing or low quality data: | 131135 (20.7%) |
SNP loci with < 50% genotype data: | 11614 |
SNPs passing initial filters: | 94048 |
Number of fixed genotype calls: | 448289 (89.2%) |
Number of heterozygous genotype calls: | 54548 (10.8%) |
SNP Loci with insufficient flanking sequence for IIGT*: | 3445 |
SNP Loci with nearby polymorphism (< 50Â bp): | 74136 |
SNP Loci meeting all defined IIGT assay design criteria: | 16467 |