Table 3 Summary of annotation of SNPs in 600 K panel to predict the genomic effect
From: Development of a high density 600K SNP genotyping array for chicken
| Â | Count | Percent |
|---|---|---|
Total number of SNPs in the panel | 580,954 | Â |
Annotation possible | 492,572 | 84.79 |
Annotation result | Â | Â |
Intergenic | 266,636 | 54.13 |
Intronic | 189,128 | 38.40 |
Exonic | Â | Â |
 Non-synonymous | 9,345 | 1.90 |
 Synonymous | 12,069 | 2.45 |
 Stopgain/stoploss | 120 | 0.02 |
1 kb Upstream | 5,892 | 1.20 |
1 kb Downstream | 6,456 | 1.31 |
UTR3 | 2,497 | 0.51 |
UTR5 | 302 | 0.06 |
Splicing | 83 | 0.02 |
Non-coding RNA (ncRNA) | 44 | 0.01 |