Identification, expression, and comparative genomic analysis of the IPT and CKX gene families in Chinese cabbage (Brassica rapa ssp. pekinensis)

Table 2 CKX gene family in Brassica rapa , along with their molecular details and relevant genomic information

Gene name^a	Locus^b	Chr^c	Sub- genome^d	ORF length^e(bp)	Deduced polypeptide^f			TargetP^g	Glycosylation Sites^h
					Length (aa)	MW (kDa)	PI
BrCKX1-1	Bra000229	A03	MF2	1323	440	49.3	8.71	—	3
BrCKX1-2	Bra016928	A04	MF1	1149	382	42.8	7.25	S/5	4
BrCKX1-3	Bra004626	A05	LF	4431	1476	162.7	8.47	M/1	12
BrCKX2-1	Bra036719	A09	MF2	1509	502	55.5	5.96	S/2	5
BrCKX2-2	Bra040677	sca	LF	1518	505	55.6	5.62	S/2	5
BrCKX3-1	Bra002777	A10	LF	1101	366	50.0	5.63	C/5	3
BrCKX3-2	Bra035640	A02	MF1	1557	518	58.9	5.62	S/5	3
BrCKX4	Bra024135	A03	MF1	1575	524	58.0	5.71	S/1	5
BrCKX5	Bra015842	A07	LF	1575	524	58.8	5.62	—	2
BrCKX6	Bra007743	A09	LF	1350	449	50.5	7.3	M/2	4
BrCKX7-1	Bra002371	A10	LF	1578	525	57.9	4.92	—	5
BrCKX7-2	Bra020157	A02	MF2	1554	517	57.6	5.2	—	3

^aGene Names given to BrCKXs in this work.
^bLocus represented by the Brassica rapa genome database.
^cChromosomal localization of the BrIPTs and BrCKXs, sca represents scaffold.
^dThree sub-genomes of Brassica rapa genome.
^eLength of open reading frame in base pairs.
^fLength (number of amino acids), molecular weight (kDa), and isoelectric point (pI) of the deduced polypeptide.
^gLocalization predicted with TargetP. M, mitochondria; C, chloroplast; S, secretory pathways; “—”, unknown location. (1 to 5), highest to lowest possibility.
^hGlycosylation sites are predicted with NetNGly.

ISSN: 1471-2164