Table 4 Functional classification of allele-specific expression (ASE) SNPs in response to Marek’s disease virus infection from broilers and layers in known genes
SNP type | Broiler | Layer | Common | ||||
|---|---|---|---|---|---|---|---|
SNPs | % of SNPs | Gene | SNPs | % of SNPs | Gene | Gene | |
Nonsynonymous | 442 | 24.3 | 399 | 317 | 27.3 | 291 | 14 |
Stop gain | 4 | 0.2 | 4 | 5 | 0.4 | 5 | 0 |
Stop loss | 2 | 0.1 | 2 | 1 | 0.1 | 1 | 0 |
Synonymous | 1,370 | 75.4 | 936 | 840 | 72.2 | 735 | 162 |
Total | 1,818 | 100 | 1,341 | 1,163 | 100 | 1,032 | 176 |