Table 2 Training set used to build regular expression and pHMMs models
Signal | Pro-region | Mature | |||||||
|---|---|---|---|---|---|---|---|---|---|
Total clusters | Unique seq. | Total seq. | Total clusters | Unique seq. | Total seq. | Total clusters | Unique seq. | Total seq. | |
A | 3 | - | 77 | 21 | 6 | 136 | 23 | 6 | 195 |
B1 | 2 | 1 | 8 | 2 | - | 13 | 7 | 3 | 13 |
B2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
B3 | 1 | 1 | 1 | - | - | - | 1 | 1 | 1 |
C | 1 | - | 3 | 2 | - | 4 | 2 | - | 4 |
D | 1 | - | 10 | 3 | 1 | 21 | 5 | 1 | 30 |
E | 1 | 1 | 1 | - | - | - | 1 | 1 | 1 |
F | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
G | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
H | 1 | - | 2 | 3 | 2 | 5 | 4 | 2 | 7 |
I1 | 3 | 1 | 12 | 5 | 4 | 13 | 8 | 2 | 48 |
I2 | 2 | - | 31 | 14 | 6 | 32 | 12 | 5 | 50 |
I3 | 1 | - | 4 | 3 | 2 | 7 | 2 | - | 8 |
J | 1 | - | 8 | 2 | 1 | 5 | 2 | - | 11 |
K | 1 | 1 | 1 | 1 | 1 | 1 | 1 | - | 3 |
L | 4 | 2 | 10 | 5 | 2 | 10 | 5 | 2 | 11 |
M | 6 | 2 | 152 | 16 | 5 | 263 | 34 | 16 | 267 |
N | 1 | - | 2 | 1 | - | 3 | 1 | - | 3 |
O1 | 14 | 3 | 198 | 20 | 7 | 292 | 32 | 4 | 437 |
O2 | 4 | 1 | 50 | 15 | 6 | 75 | 12 | 6 | 81 |
O3 | 1 | - | 16 | 7 | 5 | 21 | 3 | 1 | 26 |
P | 2 | 1 | 6 | 5 | 3 | 7 | 3 | 1 | 12 |
S | 4 | 3 | 7 | 3 | - | 9 | 5 | 1 | 14 |
T | 3 | - | 79 | 18 | 10 | 112 | 12 | 6 | 138 |
V | 1 | - | 2 | 1 | - | 2 | 1 | - | 2 |
Y | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
M---L-LTVA | 1 | - | 5 | 2 | 1 | 8 | 4 | 2 | 8 |
MKFPLLFISL | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
MKLCVVIVLL | 1 | - | 2 | 1 | 1 | 1 | 1 | - | 3 |
MKLLLTLLLG | 1 | 1 | 1 | - | - | - | - | - | - |
MKVAVVLLVS | 1 | 1 | 1 | - | - | - | - | - | - |
MRCLSIFVLL | 1 | - | 2 | 1 | 1 | 1 | 1 | 1 | 1 |
MRFLHFLIVA | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
MRFYIGLMAA | 1 | - | 2 | 1 | - | 3 | 1 | - | 4 |
MSKLVILAVL | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
MSTLGMTLL- | 1 | - | 5 | 3 | 2 | 5 | 3 | 1 | 5 |
MTAKATLLVL | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
MTFLLLLVSV | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
MTLTFLLVVA | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Conantokin | 2 | 1 | 8 | 2 | - | 13 | 4 | 1 | 19 |
Conodipine | - | - | - | - | - | - | 2 | 2 | 2 |
Conohyal | 1 | - | 2 | - | - | - | 2 | 2 | 2 |
Conolysin | - | - | - | - | - | - | 1 | - | 2 |
Conomap | - | - | - | - | - | - | 1 | 1 | 1 |
Conomarphin | 1 | - | 2 | 1 | - | 2 | 1 | - | 4 |
Conopeptide Y | 1 | 1 | 1 | 1 | 1 | 1 | 1 | - | 2 |
Conophan | - | - | - | - | - | - | 1 | - | 2 |
Conoporin | 1 | 1 | 1 | - | - | - | 1 | 1 | 1 |
Conopressin | 1 | 1 | 1 | - | - | - | 1 | - | 6 |
Conorfamide | - | - | - | - | - | - | 1 | - | 2 |
Conotoxin | 29 | 4 | 697 | 84 | 14 | 1,299 | 189 | 87 | 1,730 |
Conotoxin-like | 1 | - | 2 | 1 | 1 | 1 | 1 | - | 2 |
Contryphan | 2 | 1 | 10 | 1 | - | 13 | 2 | 1 | 15 |
Contulakin | 1 | - | 3 | 1 | - | 3 | 2 | 1 | 4 |