Table 1 Results of region calling
Data set | Proteins | Samples | Reads | UniPeak regions | Reads in regions | RNA polymerase II initiation sites | CAGE peaks | RefSeq TSS | Consensus promoters |
|---|---|---|---|---|---|---|---|---|---|
All proteins | 96 | 503 | 8.8B | 11,239 | 213M (2%) | 5,631 (50%) | 4,951 (44%) | 4,703 (42%) | 4,189 (37%) |
TFs only | 75 | 357 | 6.3B | 7,227 | 118M (2%) | 5,745 (79%) | 5,128 (71%) | 4,813 (67%) | 4,441 (61%) |
GM12878 | 46 | 102 | 1.8B | 12,887 | 61M (3%) | 7,477 (58%) | 6,315 (49%) | 5,011 (39%) | 4,522 (35%) |
K562 | 41 | 93 | 1.5B | 14,578 | 70M (5%) | 10,174 (70%) | 7,188 (49%) | 6,589 (45%) | 5,743 (39%) |
HepG2 | 32 | 76 | 1.5B | 12,312 | 48M (3%) | 6,557 (53%) | 5,232 (42%) | 4,199 (34%) | 3,791 (31%) |
H1-hESC | 25 | 52 | 985M | 3,392 | 8M (1%) | 2,180 (64%) | 2,303 (68%) | 2,127 (63%) | 1,700 (50%) |
HeLa-S3 | 16 | 34 | 498M | 13,199 | 18M (4%) | 5,499 (42%) | 4,056 (31%) | 3,243 (25%) | 2,893 (22%) |