Table 2 DNA repair proteins identification by LC-MS/MS
NCBI ID | Protein name | Unused score* | ProteinPilot score | The number of unique peptides (with the reliability of identification > = 95%) | Coverage protein sequence by unique peptides (with the reliability of identification > = 95%) |
|---|---|---|---|---|---|
gi|31541218 | SMC (Cohesin) | 84.01 | 84.01 | 55 | 54.43 |
gi|284811881 | UvrA (Excinuclease ABC subunit B) | 75.8 | 75.8 | 50 | 55.67 |
gi|284811888 | MGA_0793 (DNA helicase, contain vsr-domain) | 62.07 | 62.07 | 41 | 36.41 |
gi|284812070 | UvrD (DNA helicase II) | 51.65 | 51.65 | 27 | 47.54 |
gi|284811857 | UvrB (Excinuclease ABC subunit B) | 41.75 | 41.75 | 24 | 39.01 |
gi|31541419 | Nfo (endonuclease IV) | 31.18 | 31.18 | 17 | 63.04 |
gi|284812280 | LigA (DNA ligase) | 24.41 | 24.83 | 13 | 23.08 |
gi|284812220 | RecR (recombinase RecR) | 24.06 | 24.06 | 15 | 72.82 |
gi|284811982 | MutM (Formamidopyrimidine-DNA glycosylase) | 20.02 | 20.02 | 10 | 41.97 |
gi|31541551 | MGA_0195 (contain endonuclease type II domain) | 18.9 | 18.9 | 18 | 49.18 |
gi|284812101 | Hup2 (histone-like protein) | 16.7 | 18.1 | 23 | 71.72 |
gi|284811981 | Exo (5′- 3′-exonuclease) | 12.01 | 12.01 | 8 | 37.85 |
gi|284812049 | UvrC (Excinuclease ABC subunit C) | 6.19 | 6.19 | 4 | 5.672 |
gi|31541441 | MGA_0016 (recombinase RecO) | 5.29 | 5.29 | 3 | 19.5 |
gi|31541171 | putative Holliday junction resolvase | 4.9 | 4.9 | 5 | 31.69 |
gi|284812207 | DinB (DNA-polymerase IV) | 4.05 | 4.05 | 2 | 5.985 |
gi|31541522 | RecA (recombinase RecА) | 4.01 | 4.01 | 2 | 8.547 |
gi|31541659 | Ung (Uracil-DNA glycosylase) | 3.13 | 3.86 | 3 | 13.85 |