Skip to main content

Table 6 Differential expression of genes related to lipid and sterol metabolism

From: Inflammatory responses in primary muscle cell cultures in Atlantic salmon (Salmo salar)

Gene ID1

Annotation2

Mean fold change± SE3

Identity4

Ssa#S18890165

CB515874

23.2 ± 2.2

Creatine kinase, ubiquitous mitochondrial precursor

Ssa#STIR00012_4

AY848944

13.3 ± 1.1

Prostaglandin-endoperoxide synthase 2

Ssa#S30259776

DW546744

8.7 ± 0.3

Sphingomyelin synthase 1

Ssa#STIR22551

TC84899

6.3 ± 0.2

Lipoprotein lipase

Ssa#TC105353

TC105353

5.5 ± 1.0

Mecr protein

Ssa#STIR12701

TC70393

3.6 ± 0.1

Retinol dehydrogenase 3

Ssa#STIR31819

TC98944

3.5 ± 0.3

Glucose-6-phosphate-1-dehydrogenase

Ssa#S48420588

NM_001173773

3.2 ± 0.7

Myotubularin

Ssa#S31962884

DY691674

2.9 ± 0.1

Cytochrome c oxidase subunit 5B, mitochondrial

Ssa#S31963491

DY692281

2.8 ± 0.1

PPAR-alpha interacting complex protein 285 isoform 1

Ssa#KSS1976

KSS1976

2.8 ± 0.2

78 kDa glucose-regulated protein

Ssa#S35587721

EG874099

2.7 ± 0.2

Apolipoprotein-L3

Ssa#S30242761

DW538822

2.6 ± 0.2

Glycolipid transfer protein

Ssa#S32012431

DY741028

2.3 ± 0.1

StAR-related lipid transfer domain containing 3

Ssa#CL50Contig2

CL50Contig2

2.3 ± 0.1

Fructose-bisphosphate aldolase A

Ssa#S32007249

DY735846

2.1 ± 0.2

Adipose differentiation-related protein

Ssa#STIR13627

TC71700

−2.0 ± 0.2

Cox18 cytochrome c oxidase assembly homolog

Ssa#CA043659

CA043659

−2.1 ± 0.2

Apolipoprotein B precursor

Ssa#DW564686

DW564686

−2.1 ± 0.1

Mitochondrial uncoupling protein 2

Ssa#STIR21893

TC83911

−2.2 ± 0.1

Creatine kinase b-type

Ssa#S35679641

EG914359

−2.5 ± 0.1

Lipid phosphate phosphohydrolase 1

Ssa#STIR22405

TC84675

−2.6 ± 0.1

Lipase a

Ssa#S30285553

DW572521

−2.6 ± 0.1

Lipid phosphate phosphohydrolase 2

Ssa#S30246050

DW542111

−2.9 ± 0.3

Glyceraldehyde-3-phosphate dehydrogenase-2

Ssa#TC108704

TC108704

−3.8 ± 0.2

Lipocalin precursor

Ssa#STIR21285

TC82989

−4.9 ± 0.3

Glutamine synthetase

Ssa#S35523399

EG809777

−5.2 ± 0.5

Cholesteryl ester transfer protein, plasma

Ssa#STIR22650

TC85053

−5.2 ± 1.4

Apolipoprotein a-i binding protein

  1. List of selected mRNAs related to the lipid & sterol metabolism found to be increased or decreased in expression in response to rIL-1β stimulation. Genes were assigned to the table based upon both their GO identifier and previous knowledge of their functions. Genes with greatest fold differences in expression are presented, the genes that are lower in expression are denoted by (-) value. The genes shown were significant at p < 0.05 following t- tests with Benjamini-Hochberg FDR and greater than 2-fold change. 1Indicates the unique code for the feature on the microarray, 2Accession number of the cDNA sequence, accession numbers beginning with TC are for oligos from the TIGR Atlantic Salmon Gene Index. 3Fold change, in the case of oligos that featured multiple times in the gene list the one with the highest fold change is reported. 4Identity of the probe target as determined by BLASTX and BLASTN searches.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us