Table 1 Significant SNPs and genes implicated in this study
Chromosome | Position | Gene | SNP position | Locus | SNP code | Breed | Fat/Lean |
|---|---|---|---|---|---|---|---|
5 | 91141085 | NTS | Downstream | MARC0076967 | A/C | Duroc | Rib fat |
16 | 61040142 | FABP6 | Upstream | ASGA0073794 | A/G | Duroc | Rib fat |
13 | 94991811 | SST | Upstream | INRA0040972 | A/C | Duroc | Rib fat |
8 | 69607171 | NR3C2 | Upstream | ASGA0102890 | A/G | Duroc | Rib fat |
9 | 46808866 | TECTA | In | ASGA0086155 | A/G | Duroc | Rib fat |
3 | 87581931 | EPAS1 | In | DRGA0004073 | A/C | Duroc | Rib fat |
9 | 44294242 | TMPRSS4 | In | ASGA0096348 | A/C | Duroc | Rib fat |
15 | 44784671 | ADAM32 | In | ALGA0085262 | A/C | Duroc | Rib fat |
13 | 144382945 | MX2 | In | ALGA0074022 | A/G | Duroc | Rib fat |
12 | 32729466 | HSF5 | In | ASGA0054362 | A/G | Duroc | Rib fat |
9 | 44430920 | MPZL3 | In | CASI0012011 | A/G | Duroc | Rib fat |
10 | 56352838 | CAMK1D | In | M1GA0014251 | A/C | Duroc | Rib fat |
14 | 9438426 | DOCK5 | In | ALGA0075006 | A/G | Duroc | Rib fat |
13 | 90285880 | CCDC39 | In | ALGA0071824 | A/C | Duroc | Rib fat |
4 | 113559620 | DENND2D | In | M1GA0006409 | A/G | Duroc | Rib fat |
12 | 32843547 | TEX14 | In | ALGA0066216 | A/G | Duroc | Rib fat |
4 | 106837043 | SPAG17 | In | ALGA0027483 | A/C | Titan | Rib fat |
7 | 30950588 | TINAG | In | ALGA0039880 | A/G | Sire line | Rib fat |
7 | 33345033 | DST | In | INRA0024695 | A/G | Sire line | Rib fat |
7 | 33530081 | DST | In | ALGA0040094 | A/G | Sire line | Rib fat |
7 | 39122530 | GLO1 | In | DIAS0000554 | A/C | Sire line | Rib fat |