Genetic clusters |
hfq
|
rsmA
|
---|
RNA1 | Protein1 | RNA1 | Protein1 |
---|
Prodigiosin production | ↓ | ↓ | ↓ | ↑ |
Carbapenem production | ↓ | ↓ | ↓ | ↑ |
Type II secretion | − | − | ↑ | − |
Type IV pilus | − | − | ↑ | − |
Electron transport | ↑ | − | − | − |
Flagellar production | ↑ | − | ↑ | ↑ |
Prophage elements | − | − | ↑ | ↑ |
- 1Differentially expressed genes were identified in the transcriptomic and proteomic datasets. Up and down arrows indicate increases and decreases in expression at the level of RNA or protein. Fold changes for individual genes in these clusters as well as genes in other pathways are listed in Additional file 1: Table S4. A complete list of all genes identified as differentially expressed are listed in Additional file 2: Table S5.