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Table 5 Known type III secretion effectors of X. fragariae LMG 25863

From: Draft genome sequence of Xanthomonas fragariaereveals reductive evolution and distinct virulence-related gene content

Effector

Locus tag

Best match for Xf- sequence

Worst match among other sequences

AvrBs2

[Genbank:O1K_12410]

92.3%

72.5%

Hpa2/HpaH

[Genbank:O1K_02671]

87.6%

79.0%

HpaA

[Genbank:O1K_02586]

84.0%

68.2%

XopA/hpa1

[Genbank:O1K_02666]

79.7%

53.1%

XopB

[Genbank:O1K_11187]

84.6%

88.5%

XopC1

[Genbank:O1K_14874]

97.4%

99.9%

XopD

[Genbank:O1K_16938]

67.7%

78.2%

XopE4

Contig19 (17160..18326)

97.6%

100.0%

XopF1

[Genbank:O1K_02551]

82.6%

75.3%

XopF2

[Genbank:O1K_06487]

63.1%

55.7%

XopK

[Genbank:O1K_18791]

85.6%

72.0%

XopL

[Genbank:O1K_16566]

66.1%

60.7%

XopN

[Genbank:O1K_10027]

87.3%

73.4%

XopP a

[Genbank:O1K_11182, Genbank:O1K_11197, Genbank:O1K_11202, Genbank:O1K_11207, Genbank:O1K_11212]; Contig64; Contig67

  

XopQ

[Genbank:O1K_15074]

87.1%

71.4%

XopR

[Genbank:O1K_01999]

75.7%

57.4%

XopV

[Genbank:O1K_05602]

77.5%

71.6%

XopX

[Genbank:O1K_04266]

83.3%

68.1%

XopX b

[Genbank:O1K_04271, Genbank:O1K_04281]

85.1%

68.1%

XopZ2

[Genbank:O1K_02556]

87.3%

88.5%

XopAD a

[Genbank:O1K_14315]; Contig24 (1..5097); Contig57; Contig92 (89708..96529)

  

XopAE

[Genbank:O1K_08322]

69.6%

84.7%

XopAF

[Genbank:O1K_18806]

72.5%

50.4%

XopAG2

[Genbank:O1K_00020]

96.3%

90.6%

XopAM

[Genbank:O1K_07544]

87.3%

80.5%

XopAS c

[Genbank:O1K_11585]

ND

ND

  1. Overview of known type III secretion effector homologs retrieved in X. fragariae LMG 25863, together with their locus tags in the whole-genome sequences. Incomplete or un-annotated loci are marked with the label of the coding contig and coding nucleotide range, when applicable. As an indication of the diversity within each effector class, the pairwise protein sequence similarity between the X. fragariae homolog and its best match found among the other Xanthomonas genomes is given, and the worst sequence match among all remaining effector sequences. aPartial sequences because of incomplete genome assembly, bO1K_04281 is a suspected incorrect double of O1K_04271 caused by erroneous sequence assembly, cno other complete homologs in Xanthomonas. ND, not determined.