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Figure 3 | BMC Genomics

Figure 3

From: Accurate detection of subclonal single nucleotide variants in whole genome amplified and pooled cancer samples using HaloPlex target enrichment

Figure 3

Correlation between allele fractions in genomic DNA (gDNA) and whole genome amplified DNA (wgaDNA). Correlation of the allele fractions of candidate single nucleotide variants (SNVs) and germline SNPs determined in experiments using gDNA and wgaDNA from the same original DNA sample. Only variants with a HaloPlex sequence depth ≥30 in both gDNA and wgaDNA are shown (n = 1439). SNVs classified as somatic are shown in black, non-validated candidate SNVs in grey, and germline SNPs in red.

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BMC Genomics

ISSN: 1471-2164

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