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Table 1 Read and assembly statistics for each of the four Buchnera Mp genomes

From: Comparative analysis of genome sequences from four strains of the Buchnera aphidicola Mp endosymbion of the green peach aphid, Myzus persicae

 

       Tobacco

       Non-tobacco

 

USDA

W106

F009

G002

454 reads

    

  Total reads

72,648

86,041

72,240

83,404

  Mapped reads

48,461

74,153

55,579

72,087

  Mapped read rate

67%

86%

77%

86%

Illumina reads

    

  Total reads

8,191,608

5,030,809

3,801,794

10,435,517

  Mapped reads

4,884,034

3,906,073

2,648,621

7,136,918

  Mapped read rate

60%

78%

70%

68%

Buchnera genome assembly details

    

  Number contigs >500 bp

48

152

36

184

  Average size of contigs >500 bp

14,166

4,161

18,730

3,429

  N50 of contigs >500 bp

62,925

6,320

123,327

5,580

  Number of bases in contigs >500 bp

679,985

632,575

674,282

631,022

  Total number contigs

1,556

3,420

1,810

3,709

  N50

241

223

241

242

  Number of bases

1,009,382

1,283,886

1,078,855

1,420,326

  Size of largest contig

184,872

31,386

321,471

18,486

  Buchnera syntenic contigs

15

137

12

146