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Table 2 Selected genes with altered expression in anthers of the GMS mutant

From: Transcriptomic analysis of differentially expressed genes during anther development in genetic male sterile and wild type cotton by digital gene-expression profiling

Functional

Unigene

Gene annotation

TPM (transcript per million clean tag)

group

accession

F-1

F-2

F-3

S-1

S-2

S-3

Histone modification and DNA methylation

        
 

TC179702

24-sterol C-methyltransferase

114.28

88.21

84.44

32.82

82.49

183.09

 

TC179697

Gamma-tocopherol methyltransferase

72.48

43.18

32.48

37.44

51.22

79.54

 

TC208258

Histone H3

12.66

2.36

4.56

0

16.43

1.87

 

DT048644

Histone H2B

38.15

4.22

20.72

8.89

32.32

8.18

 

TC201522

Histone H2B

26.7

0.67

5.97

9.74

21.73

4.09

Hormone/signaling

        
 

TC202864

Gibberellic acid receptor

6.59

3.88

5.97

5.98

10.24

2.04

 

TC194111

Gibberellin 3-hydroxylase 1

27.57

2.53

6.85

0

17.84

1.7

 

DW512177

DELLA protein

11.97

3.54

5.09

0

7.24

3.75

 

TC212596

Ethylene receptor

14.56

9.16

18.78

7.18

18.19

18.22

 

TC179902

Ethylene-responsive transcription factor

16.65

3.88

12.99

15.04

17.49

12.09

 

BF269053

ACC oxidase 4

144.97

76.41

132.3

47.7

172.2

195.01

 

TC183353

S-adenosylmethionine synthetase

105.2

46.72

98.31

40.01

42.39

167.7

Sucrose and starch metabolism

        
 

TC218640

Sucrose transporter 1

3.12

0

114.2

5.13

3.71

0.68

 

TC199514

Sucrose synthase

33.81

15.52

82.86

12.99

27.73

41.9

 

BE055698

Sugar transferase

2.25

13.16

10.53

69.58

1.41

12.26

 

TC206300

Isoamylase

4.51

10.63

8.95

7.69

4.24

5.79

 

ES824058

alpha-1,4-glucan phosphorylase L isozyme

0.69

13.83

0.53

0

0.71

0

 

TC216914

Glycosyl hydrolase

0.52

14.51

0.35

6.33

0.35

0

 

TC200529

Granule bound starch synthase

1.04

15.86

1.58

2.74

3.89

1.7

 

TC217124

Hexose transporter 6

11.44

8.1

12.29

2.56

12.01

7.32

 

TC182973

Starch branching enzyme II-1

7.63

7.25

37.74

9.23

5.83

8.52

Pentose phosphate pathway

        
 

TC217284

Fructose bisphosphate aldolase

3.47

0.51

4.92

2.91

2.83

0.34

 

TC197807

6-Phosphogluconate dehydrogenase

14.57

83.66

21.94

9.92

24.9

12.94

Glycolysis

        
 

TC218576

Hexokinase

10.92

7.59

13.34

0

10.77

1.7

 

CF075621

Phosphofructo kinase

13.53

14

27.56

17.61

20.67

8.69

 

TC186567

Phosphoglycerate kinase

24.1

7.76

15.45

0

28.79

4.09

 

TC213442

Pyruvate kinase

45.78

49.25

29.14

47.53

23.14

62.68

 

TC187515

Alcohol dehydrogenase

0.52

3.04

0.88

0

1.59

0.34

Flavonoid metabolism

        
 

TC222327

Chalcone synthase

27.87

4.89

14.22

4.51

8.13

12.26

 

TC198373

Flavonoid 3′,5′-hydroxylase

37.69

15.19

18.78

27.35

21.93

14.82

 

TC180742

Anthocyanidin reductase

599.13

429.3

1736

190.4

499.6

597.7

 

TC185652

Leucoanthocyanidin reductase 1

51.12

7.93

67.24

25.66

17.84

52.97

Program cell death (PCD)

        
 

TC216464

Cysteine proteinase inhibitor

2.6

17.04

66.53

0

9.54

60.46

 

TC201153

Cysteine proteinase

4.51

6.58

2.63

5.98

4.24

4.6

 

TC184452

Cytochrome C

15.9

15.01

31.6

32.08

16.07

65.06

Cell wall development

        
 

TC195867

Alpha-tubulin

14.05

7.93

21.59

5.98

14.48

17.54

 

TC212355

Beta-galactosidase

0

0

0

15.95

133.42

304.23

 

TC224657

Katanin-like protein

19.6

6.24

8.78

23.93

20.67

12.09

 

TC214470

Actin depolymerizing factor 1

3.59

7.93

8.08

13.3

8.13

14.31

 

DN827899

Actin depolymerizing factor 2

7.52

53.34

79.03

119.48

63.42

143.78

Reactive oxygen species (ROS) generation/scavenging

        
 

TC197377

Peroxidase precursor

6.94

1.69

5.09

0

4.06

3.24

 

ES840062

Class III peroxidase

1.56

3.2

2.98

15.9

0.71

1.87

 

TC203760

Cytosolic ascorbate peroxidase 1

3.12

9.11

1.23

5.3

2.83

1.02

 

TC189625

Peroxiredoxin

13.18

3.71

15.1

6.33

12.89

14.31

 

TC179896

Superoxide dismutase

70.58

71.35

88.83

6.15

43.63

74.09

 

TC206683

Catalase isozyme 1

106.99

56.17

275.2

83.09

222.2

106.9

 

TC180628

Glutathione S-transferase

1.21

0

0.35

0

13.78

2.55