Functional | Unigene | Gene annotation | TPM (transcript per million clean tag) | |||||
---|---|---|---|---|---|---|---|---|
group | accession | F-1 | F-2 | F-3 | S-1 | S-2 | S-3 | |
Histone modification and DNA methylation | Â | Â | Â | Â | Â | Â | Â | Â |
 | TC179702 | 24-sterol C-methyltransferase | 114.28 | 88.21 | 84.44 | 32.82 | 82.49 | 183.09 |
 | TC179697 | Gamma-tocopherol methyltransferase | 72.48 | 43.18 | 32.48 | 37.44 | 51.22 | 79.54 |
 | TC208258 | Histone H3 | 12.66 | 2.36 | 4.56 | 0 | 16.43 | 1.87 |
 | DT048644 | Histone H2B | 38.15 | 4.22 | 20.72 | 8.89 | 32.32 | 8.18 |
 | TC201522 | Histone H2B | 26.7 | 0.67 | 5.97 | 9.74 | 21.73 | 4.09 |
Hormone/signaling | Â | Â | Â | Â | Â | Â | Â | Â |
 | TC202864 | Gibberellic acid receptor | 6.59 | 3.88 | 5.97 | 5.98 | 10.24 | 2.04 |
 | TC194111 | Gibberellin 3-hydroxylase 1 | 27.57 | 2.53 | 6.85 | 0 | 17.84 | 1.7 |
 | DW512177 | DELLA protein | 11.97 | 3.54 | 5.09 | 0 | 7.24 | 3.75 |
 | TC212596 | Ethylene receptor | 14.56 | 9.16 | 18.78 | 7.18 | 18.19 | 18.22 |
 | TC179902 | Ethylene-responsive transcription factor | 16.65 | 3.88 | 12.99 | 15.04 | 17.49 | 12.09 |
 | BF269053 | ACC oxidase 4 | 144.97 | 76.41 | 132.3 | 47.7 | 172.2 | 195.01 |
 | TC183353 | S-adenosylmethionine synthetase | 105.2 | 46.72 | 98.31 | 40.01 | 42.39 | 167.7 |
Sucrose and starch metabolism | Â | Â | Â | Â | Â | Â | Â | Â |
 | TC218640 | Sucrose transporter 1 | 3.12 | 0 | 114.2 | 5.13 | 3.71 | 0.68 |
 | TC199514 | Sucrose synthase | 33.81 | 15.52 | 82.86 | 12.99 | 27.73 | 41.9 |
 | BE055698 | Sugar transferase | 2.25 | 13.16 | 10.53 | 69.58 | 1.41 | 12.26 |
 | TC206300 | Isoamylase | 4.51 | 10.63 | 8.95 | 7.69 | 4.24 | 5.79 |
 | ES824058 | alpha-1,4-glucan phosphorylase L isozyme | 0.69 | 13.83 | 0.53 | 0 | 0.71 | 0 |
 | TC216914 | Glycosyl hydrolase | 0.52 | 14.51 | 0.35 | 6.33 | 0.35 | 0 |
 | TC200529 | Granule bound starch synthase | 1.04 | 15.86 | 1.58 | 2.74 | 3.89 | 1.7 |
 | TC217124 | Hexose transporter 6 | 11.44 | 8.1 | 12.29 | 2.56 | 12.01 | 7.32 |
 | TC182973 | Starch branching enzyme II-1 | 7.63 | 7.25 | 37.74 | 9.23 | 5.83 | 8.52 |
Pentose phosphate pathway | Â | Â | Â | Â | Â | Â | Â | Â |
 | TC217284 | Fructose bisphosphate aldolase | 3.47 | 0.51 | 4.92 | 2.91 | 2.83 | 0.34 |
 | TC197807 | 6-Phosphogluconate dehydrogenase | 14.57 | 83.66 | 21.94 | 9.92 | 24.9 | 12.94 |
Glycolysis | Â | Â | Â | Â | Â | Â | Â | Â |
 | TC218576 | Hexokinase | 10.92 | 7.59 | 13.34 | 0 | 10.77 | 1.7 |
 | CF075621 | Phosphofructo kinase | 13.53 | 14 | 27.56 | 17.61 | 20.67 | 8.69 |
 | TC186567 | Phosphoglycerate kinase | 24.1 | 7.76 | 15.45 | 0 | 28.79 | 4.09 |
 | TC213442 | Pyruvate kinase | 45.78 | 49.25 | 29.14 | 47.53 | 23.14 | 62.68 |
 | TC187515 | Alcohol dehydrogenase | 0.52 | 3.04 | 0.88 | 0 | 1.59 | 0.34 |
Flavonoid metabolism | Â | Â | Â | Â | Â | Â | Â | Â |
 | TC222327 | Chalcone synthase | 27.87 | 4.89 | 14.22 | 4.51 | 8.13 | 12.26 |
 | TC198373 | Flavonoid 3′,5′-hydroxylase | 37.69 | 15.19 | 18.78 | 27.35 | 21.93 | 14.82 |
 | TC180742 | Anthocyanidin reductase | 599.13 | 429.3 | 1736 | 190.4 | 499.6 | 597.7 |
 | TC185652 | Leucoanthocyanidin reductase 1 | 51.12 | 7.93 | 67.24 | 25.66 | 17.84 | 52.97 |
Program cell death (PCD) | Â | Â | Â | Â | Â | Â | Â | Â |
 | TC216464 | Cysteine proteinase inhibitor | 2.6 | 17.04 | 66.53 | 0 | 9.54 | 60.46 |
 | TC201153 | Cysteine proteinase | 4.51 | 6.58 | 2.63 | 5.98 | 4.24 | 4.6 |
 | TC184452 | Cytochrome C | 15.9 | 15.01 | 31.6 | 32.08 | 16.07 | 65.06 |
Cell wall development | Â | Â | Â | Â | Â | Â | Â | Â |
 | TC195867 | Alpha-tubulin | 14.05 | 7.93 | 21.59 | 5.98 | 14.48 | 17.54 |
 | TC212355 | Beta-galactosidase | 0 | 0 | 0 | 15.95 | 133.42 | 304.23 |
 | TC224657 | Katanin-like protein | 19.6 | 6.24 | 8.78 | 23.93 | 20.67 | 12.09 |
 | TC214470 | Actin depolymerizing factor 1 | 3.59 | 7.93 | 8.08 | 13.3 | 8.13 | 14.31 |
 | DN827899 | Actin depolymerizing factor 2 | 7.52 | 53.34 | 79.03 | 119.48 | 63.42 | 143.78 |
Reactive oxygen species (ROS) generation/scavenging | Â | Â | Â | Â | Â | Â | Â | Â |
 | TC197377 | Peroxidase precursor | 6.94 | 1.69 | 5.09 | 0 | 4.06 | 3.24 |
 | ES840062 | Class III peroxidase | 1.56 | 3.2 | 2.98 | 15.9 | 0.71 | 1.87 |
 | TC203760 | Cytosolic ascorbate peroxidase 1 | 3.12 | 9.11 | 1.23 | 5.3 | 2.83 | 1.02 |
 | TC189625 | Peroxiredoxin | 13.18 | 3.71 | 15.1 | 6.33 | 12.89 | 14.31 |
 | TC179896 | Superoxide dismutase | 70.58 | 71.35 | 88.83 | 6.15 | 43.63 | 74.09 |
 | TC206683 | Catalase isozyme 1 | 106.99 | 56.17 | 275.2 | 83.09 | 222.2 | 106.9 |
 | TC180628 | Glutathione S-transferase | 1.21 | 0 | 0.35 | 0 | 13.78 | 2.55 |