From: Identifying Mendelian disease genes with the Variant Effect Scoring Tool
 | Performance on benchmark | Performance on benchmark (subset scored by all methods) | ||
---|---|---|---|---|
Method | ROC AUC | PR AUC | ROC AUC | PR AUC |
VEST | 0.912 | 0.919 | 0.917 | 0.884 |
PolyPhen2 | 0.857 | 0.840 | 0.854 | 0.762 |
SIFT4.0 | 0.835 | 0.715 | 0.838 | 0.724 |