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Table 2 TF specific co-occurring cofactor motifs.

From: Cell-type and transcription factor specific enrichment of transcriptional cofactor motifs in ENCODE ChIP-seq data

Target TF

Co-occurring motifs (Jaspar and Uniprobe Motif ID)

Total

c-Fos

MA0419.1, MA0316.1, MA0314.1, MA0315.1, MA0060.1

5

c-Jun

MA0419.1, MA0018.2, Atf1 primary, Jundm2 primary

4

c-Myc

Sp4 secondary, Zfp161 secondary, MA0324.1, Tcfap2e primary, MA0112.1, Plagl1 primary, MA0374.1, MA0014.1, Tcfap2a secondary, Zic2 primary, Zic3 primary, Zic1 primary, MA0395.1

13

Egr-1

Sp4 secondary, Zfp161 secondary, MA0324.1, MA0375.1, Tcfap2e primary, MA0374.1, MA0014.1, MA0268.1

8

GABP

Sp4 secondary, Zfp161 secondary, MA0337.1, MA0324.1, MA0375.1, Tcfap2e primary, MA0048.1, MA0112.1, MA0374.1, MA0014.1, MA0145.1, MA0138.2, Tcfap2a secondary, Zic2 primary, Zic3 primary, Zic1 primary, MA0145.1, Zic2 primary, Tcfap2b primary

19

GATA-1

Mtf1 secondary, Tcfap2e secondary, MA0048.1, Srf secondary, Zfp105 primary, MA0402.1, MA0205.1, Sox13 secondary, Zic2 secondary, Zic1 secondary, Tcfap2a secondary, MA0154.1, Zic3 secondary, MA0057.1

14

GATA-2

Gata6 primary, Gata3 primary

2

MafK

MA0419.1, Mtf1 secondary, Tcfap2e secondary, Srf secondary, Zfp105 primary, MA0099.2, MA0150.1,

9

Max

Plagl1 primary

1

NFKB

MA0364.1, Sox13 secondary, MA0154.1, Zic1 primary

4

SP1

Sp4 secondary, Zfp161 secondary, MA0316.1, MA0315.1, Egr1 secondary, MA0112.1, Plagl1 primary, MA0374.1, MA0014.1, Sox13 secondary, Tcfap2a secondary, 19 MA0314.1, MA0060.1, MA0057.1, MA0395.1, MA0060.1

19

STAT1

Sox13 secondary

1

STAT3

MA0099.1, Jundm2 secondary, MA0272.1, MA0099.2, MA0303.1

5

USF-1

Plagl1 primary, MA0314.1, MA0060.1

3

YY1

Zic2 primary

1

  1. Listed in the table are motifs found consistently enriched within ChIP-seq peaks investigating a particular TF independent of the cell type investigated.