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Table 3 Precision and recall of publically available classifications.

From: Detection and classification of peaks in 5' cap RNA sequencing data

 

Segway

 

ENCODE HMM

 

Proposed Method

 

Cell Line

Precision

Recall

Precision

Recall

Precision

Recall

GM12878

0.7

0.64

0.25

0.92

0.77

0.81

H1-ESC

0.59

0.71

0.27

0.89

0.61

0.81

HeLa-S3

0.79

0.66

0.32

0.91

0.76

0.87

HepG2

0.59

0.59

0.23

0.93

0.69

0.79

HUVEC

0.82

0.67

0.26

0.94

0.81

0.85

K562

0.77

0.62

0.27

0.93

0.71

0.88

  1. The reference labelling is the collection of segments that overlap a GENCODE transcript with at least 2 supporting CAGE reads within 500 bases either side of the annotated start location. An example of the proposed method's performance is presented alongside the two public methods, for a SVM cost parameter value of 0.1 and using only internal features.
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BMC Genomics

ISSN: 1471-2164

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