Skip to main content

Table 6 miRNAs family

From: Exploration of microRNAs in porcine milk exosomes

 

Family

Seed

Number

Members

Family 1

let-7

GAGGTAG

9

ssc-let-7i, ssc-miR-98, ssc-let-7a,ssc-let-7f, ssc-let-7c, ssc-let-7 g, ssc-let-7e, ssc-let7d-5p

Family 2

mir-1

GGAATGT

3

ssc-miR-1, ssc-miR-206, PC-117

Family 3

mir-10

ACCCTGT

2

ssc-miR-10b, ssc-miR-10a

Family 4

mir-103

GCAGCAT

2

ssc-miR-107, ssc-miR-103

Family 5

mir-125

CCCTGAG

2

ssc-miR-125a, ssc-miR-125b

Family 6

mir-130

AGTGCAA

2

ssc-miR-130b, ssc-miR-130a

Family 7

mir-148

CAGTGCA

3

ssc-miR-148b, ssc-miR-152, ssc-miR-148a

Family 8

mir-17

AAAGTGC

3

ssc-miR-106a, ssc-miR-17-5p, ssc-mir-20b-1/ssc-mir-20b-2

Family 9

mir-181

ACATTCA

4

ssc-miR-181a, ssc-miR-181b, ssc-miR-181c, ssc-miR-181d-5p

Family 10

mir-186

AAAGAAT

2

ssc-miR-186, PC-36

Family 11

mir-193

ACTGGCC

2

ssc-miR-193a-3p, PC-3

Family 12

mir-221

GCTACAT

2

ssc-miR-222, ssc-miR-221

Family 13

mir-23

TCACATT

2

ssc-miR-23b, ssc-miR-23a

Family 14

mir-27

TCACAGT

2

ssc-miR-27a,ssc-miR-27b

Family 15

mir-29

AGCACCA

2

ssc-miR-29b, ssc-miR-29c

Family 16

mir-30

GTAAACA

5

ssc-miR-30e-5p, ssc-miR-30c, ssc-miR-30d, ssc-miR-30b-5p, ssc-miR-30a-5p

Family 17

mir-30(#)

TTTCAGT

2

ssc-miR-30a-3p, ssc-miR-30e-3p

Family 18

mir-339

CCCTGTC

2

ssc-miR-339-5p, ssc-miR-4334-3p

Family 19

mir-34

GGCAGTG

2

ssc-miR-34c, ssc-miR-34a,

Family 20

mir-363

ATTGCAC

3

ssc-miR-363, ssc-miR-92b-3p, ssc-miR-92a

Family 21

mir-374

TATAATA

2

ssc-miR-374b-5p, ssc-miR-374a,

Family 22

mir-378

CTGGACT

2

ssc-miR-378, PS-2

Family 23

mir-491

GTGGGGA

2

ssc-miR-491, PC-122

Family 24

mir-497

AGCAGCA

4

ssc-miR-497, ssc-miR-15b, ssc-miR-16, ssc-miR-15a

Family 25

mir-9

CTTTGGT

2

ssc-miR-9-2, ssc-miR-9-1,

Family 26

mir-99

ACCCGTA

3

ssc-miR-99a, ssc-miR-99b, ssc-miR-100

Family 27

new-1

CATGATT

2

P-m0040-3p(PC-9), P-m0240-5p(PC-232),

Family 28

new-2

AGAGGGA

2

P-m0048-3p(PC-152), P-m0064-3p(PC-217)

Family 29

new-3

ATTTGAT

2

P-m0084-5p(PC-228), P-m0105-3p(PC-72),

Family 30

new-4

GCTAGGA

2

P-m0110-5p(PC-112), P-m0139-5p(PC-111)

Family 31

new-5

TATGGAT

2

P-m0113-3p(PC-130), P-m0129-5p(PC-129)

Family 32

new-6

CCTGGAT

2

P-m0142-5p(PC-164), P-m0179-3p(PC-165)

Family 33

new-7

CATATTT

2

P-m0161-3p(PC-231), P-m0244-3p(PC-162)

Family 34

new-8

GTTTGGA

2

P-m0183-3p(PC-286), P-m0325-5p(PC-128)

Family 35

new-9

CTTTGGG

2

P-m0229-5p(PC-15), P-m0342-3p(PC-105)

  1. The underline indicated this family contains novel miRNAs. #: due to miRNAs classification by seed sequence, 3p and 5p of miR-30 represent different miRNAs families. PC is unique ID for porcine miRNAs candidate.