Table 1 General characteristic features of the Sphingobium genomes

Project ID

PRJNA208542

PRJNA201012

PRJNA208544

PRJNA201016

PRJNA201649

PRJNA202090

PRJNA50313

PRJDA19949

PRJNA73353

NCBI Accession No.

AUDA00000000

ATDO00000000

AUWY00000000

ATHO00000000

ATDP00000000

ATIB00000000

AJXQ00000000

AP010803 to AP010806

AP012222, AP012223

Source of isolation

HCH Dumpsite, India

HCH Dumpsite, India

HCH Dumpsite, India

HCH Dumpsite, India

HCH Dumpsite, India

HCH Dumpsite, Czech Republic

Rhizosphere Soil, India

Soil Contaminated with γ-HCH, Japan

Waste water of kraft mill pulp, Japan

HCH Degarder

Yes

Yes

Yes

No

No

No

Yes

Yes

No

Genome Size (bp)

5,894,129

4,741,576

4,754,053

4,170,546

5,360,246

4,848,216

4,082,196

4,424,878

4,348,133

G + C content (%)

64.5

65.5

65

64.7

63.6

64

65.8

65.6

66

Predicted CDS

4646 (5161068 bp)

4646 (4105641 bp)

4636 (4152861 bp)

4033 (3644184 bp)

5288 (4682346 bp)

4914 (4312911 bp)

3976 (3570642 bp)

4414 (3929727 bp)

4097 (3825558 bp)

Pseudogenes

10

46

2

70

45

39

-

-

-

Average Gene Size (bp)

903

889

896

903

890

852

886

890

933

% of CDS

87.56%

86.58%

87.35%

87.38%

88.31%

88.96%

87.46%

88.80%

87.98%

IS 6100

21

18

19

24

15

22

11

5

0

tRNA

66

54

56

49

59

56

54

55

50

rRNA

11

13

12

9

15

12

3

9

6

Genomic islands (bp)

1104688

705420

180116

201158

179141

48062

427792

395714

244403