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Figure 3 | BMC Genomics

Figure 3

From: Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq

Figure 3

Junction candidate creation from split-read alignments that do not overlap. a) If two alignments of a read to the reference genome do not meet or overlap in the middle of the read, then there are unique “read-only” bases present between the two matches to the reference sequence that do not match either side. b) This type of junction candidate can be fully described by the reference coordinates on each side of the junction breakpoint, the directions in the reference sequence each junction side continues to match from those positions, and the identity of the read-only bases inserted at the junction breakpoint.

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BMC Genomics

ISSN: 1471-2164

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