Table 3 Comparison of normalized counts (NC) of novel Vv-miRNAs between GA 3 treated and control grapevine berries
From: Grapevine microRNAs responsive to exogenous gibberellin
miRNA ID | Mature sequences | NC | Identity of frequency | |
|---|---|---|---|---|
Control | GA treatment | |||
Vvi-miRC01 | CTATGTTATAGGATCTTGGAT | 9.16 | 17.19 | ↑ |
Vvi-miRC01* | CCAAGATACTATAACATGGTC | 0.00 | 0.17 | ▲ |
Vvi-miRC02 | TCCCTTTGGAAGTGCTAAGCG | 0.00 | 1.83 | ▲ |
Vvi-miRC03 | AGTGGTGGCAAGGATGAGCAA | 0.00 | 0.52 | ▲ |
Vvi-miRC04 | TTTGGAATGATTTGTTGATGA | 4.62 | 1.48 | ↓ |
Vvi-miRC05 | AAGATCTCCCATTGCATCTGA | 0.00 | 0.52 | ▲ |
Vvi-miRC06 | TTTTTTGGTTATGGTTGGCTG | 0.61 | 1.40 | ↑ |
Vvi-miRC07 | CTCAAGAAAGCTGTGGGAAAA | 0.61 | 1.05 | ↑ |
Vvi-miRC07* | TTTCCACATCTTTCTTGAACT | 0.09 | 0.17 | ● |
Vvi-miRC08 | AGAAGAACAAGTAGACTGAGC | 0.00 | 0.96 | ▲ |
Vvi-miRC09 | TTATATAGGCTTTGAGGATGGA | 0.00 | 1.92 | ▲ |
Vvi-miRC10 | TTTTAAAAAGGTTCGTCATTC | 0.00 | 0.87 | ▲ |
Vvi-miRC11 | CCGTGACAAGTGGTATCAGAG | 0.00 | 1.13 | ▲ |
Vvi-miRC12 | TCTGAAGTTTGAAGAGCTGTG | 4.97 | 10.56 | ↑ |
Vvi-miRC12* | AGAGCAATCTACGAACAACAGGAA | 0.09 | 0.09 | ● |
Vvi-miRC13 | TTGGCTTGGAGATGGATCATT | 0.00 | 10.56 | ▲ |
Vvi-miRC14 | TTGGCTTGGAGATGGATCATT | 0.00 | 10.56 | ▲ |
Vvi-miRC15 | TCAATTTGAGAGCTGGAAGAA | 0.61 | 0.70 | ● |
Vvi-miRC16 | ATATTGGTAAATGAATGTTCG | 0.00 | 1.40 | ▲ |
Vvi-miRC17 | AATTTCTTATGTTCATGATTG | 0.00 | 0.79 | ▲ |
Vvi-miRC18 | AAGAGCAGTTGAACTGAAGCA | 0.70 | 1.57 | ↑ |
Vvi-miRC19 | TCTGTCGCAGGAGAGATGATGC | 1.66 | 4.19 | ↑ |
Vvi-miRC20 | GGAATGGGCTGATTGGGATA | 2551.57 | 760.03 | ↓ |
Vvi-miRC20* | TTCCCAATGCCGCCCATTCCAA | 94.07 | 208.55 | ↑ |
Vvi-miRC21 | CCAAGAGGGTGGAGTTCAGAT | 0.00 | 1.48 | ▲ |
Vvi-miRC21* | CTGAACTCTCTCCCTCATGGCC | 0.00 | 0.87 | ▲ |
Vvi-miRC22 | CTAAATTGCTTCGGGTCCTGC | 0.00 | 6.63 | ▲ |
Vvi-miRC22* | AGGAGATGAGGTATGTTTACAT | 0.00 | 5.93 | ▲ |
Vvi-miRC23 | AAACATGAGTCTGGACCTTGA | 0.00 | 0.79 | ▲ |
Vvi-miRC24 | AAACATGAGTCTGGACCTTGA | 0.00 | 0.79 | ▲ |
Vvi-miRC25 | TCTGTTTTCACTCTCATTAAG | 0.00 | 1.13 | ▲ |
Vvi-miRC25* | TAGTGAGAATGAGTTGGGGAAG | 0.00 | 0.09 | ▲ |
Vvi-miRC26 | TCGGAGAAGTGTGATGTGTAT | 0.00 | 0.70 | ▲ |
Vvi-miRC27 | ATACCATGTGGAAAAGAGGAATC | 6.72 | 5.85 | ● |
Vvi-miRC28 | ATTGGCAGAATATTCAAGGTTT | 0.44 | 0.87 | ↑ |
Vvi-miRC29 | TTATTAGGAGGACATTTAGGTAT | 2.88 | 3.49 | ● |
Vvi-miRC30 | TGCGGGTGGAAGAGAAGGAAG | 5.67 | 3.49 | ↓ |
Vvi-miRC31 | TTCCTGCGGTTTCTCGGCGAC | 0.96 | 0.96 | ● |
Vvi-miRC32 | TTTTCCTATGATTTCTTGGCA | 0.87 | 0.79 | ● |
Vvi-miRC32* | CTGGGAAAGCGTGGGAAAACA | 0.00 | 0.09 | ▲ |
Vvi-miRC33 | TTCCTATCGTTCCCGGGATTT | 0.00 | 1.22 | ▲ |
Vvi-miRC34 | TGACCGGCTCTTATCTCTCATG | 1.48 | 3.93 | ↑ |
Vvi-miRC34* | TGAAGATAAAGAGTCTCGTCTGG | 0.35 | 0.09 | ↓ |
Vvi-miRC35 | GGAATGGATGGCATGGGAACCA | 0.52 | 0.52 | ● |
Vvi-miRC36 | TGAGTAGTGGACTATCGCATG | 14.57 | 1728.01 | ↑ |
Vvi-miRC36* | TGAGATAAGTCTGCTGCTCCAT | 0.61 | 94.76 | ↑ |
Vvi-miRC37 | TGGATGCATGTAGCTTGTCAA | 16.06 | 0.87 | ↓ |
Vvi-miRC37* | GACAAGTTACATACATCCAAG | 1.05 | 0.17 | ↓ |
Vvi-miRC38 | TCCTTCGGCGTCGGCAAATCC | 1.75 | 1.22 | ↓ |
Vvi-miRC39 | AAGGGTTTCTCACAGAGTTTA | 0.00 | 0.79 | ▲ |
Vvi-miRC39* | AGCTCTGTTGGACTCTCTTTG | 0.00 | 0.17 | ▲ |
Vvi-miRC40 | GAGGAGAATGTAGTGGGGTTA | 0.52 | 0.44 | ● |
Vvi-miRC41 | CTTTGATCAGATATTGGATTG | 0.00 | 1.40 | ▲ |
Vvi-miRC41* | AGCAGAGTTTGATAGAGGGC | 0.00 | 0.09 | ▲ |
Vvi-miRC42 | AATGACATGAGTTGGAACTAA | 0.00 | 0.87 | ▲ |
Vvi-miRC43 | GTTGGAAGCCGGTGGGGGACC | 4389.70 | 425.65 | ↓ |
Vvi-miRC44 | GTTGGAAGCCGGTGGGGGACC | 4389.70 | 425.65 | ↓ |
Vvi-miRC45 | GTTGGAAGCCGGTGGGGGACC | 4389.70 | 425.65 | ↓ |
Vvi-miRC46 | GTTGGAAGTCGGTGGGGGAAC | 1990.92 | 272.69 | ↓ |
Vvi-miRC47 | GGCGATTGTAAATATGGGTAA | 3.75 | 1.13 | ↓ |
Vvi-miRC48 | TCTAGATTTGGAAGTAGGTCA | 0.70 | 0.44 | ● |
Vvi-miRC49 | GTTGGAAGTCGGTGGGGGACC | 1089.01 | 72.95 | ↓ |
Vvi-miRC50 | GTTGGAAGCCGGTGGGGGACC | 4389.70 | 425.65 | ↓ |
Vvi-miRC51 | TGGGCTTGTGGAGAAGAAAGTGA | 0.96 | 0.52 | ↓ |
Vvi-miRC52 | CATGGGCGGTTTGGTAAGAGG | 2805.93 | 1401.92 | ↓ |
Vvi-miRC52* | TCTTACCAACACCTCCCATTCC | 140.49 | 198.43 | ↑ |
Vvi-miRC53 | GGTATGGGAGGATTGGGGAGA | 1305.32 | 437.43 | ↓ |
Vvi-miRC53* | TTCCCAAGACCCCCCATGCCAA | 62.48 | 327.23 | ↑ |
Vvi-miRC54 | TCATACCTCGATCTTCGGTTTC | 0.00 | 0.70 | ▲ |
Vvi-miRC54* | AATCTGAGATCGAGAATGAAA | 0.00 | 0.09 | ▲ |
Vvi-miRC55 | ATTCGAACTCAAGACTAAGGT | 0.00 | 41.54 | ▲ |
Vvi-miRC56 | GAAGCTCTTGAGGGGGACTG | 378.18 | 60.38 | ↓ |
Vvi-miRC56* | ACTCTCCCTCAAGGGCTTCTG | 12.13 | 1.31 | ↓ |
Vvi-miRC57 | AGGTGTAGATGCAAGTGCAGA | 0.00 | 1.05 | ▲ |
Vvi-miRC58 | TTTAATTTACTAGAGATCTCT | 1.13 | 1.40 | ● |
Vvi-miRC59 | GGAGTGAAATTGCAGTGACGG | 0.00 | 1.13 | ▲ |
Vvi-miRC60 | TCAGCAGGAATTGGACCAGAA | 2.88 | 3.75 | ● |
Vvi-miRC61 | ACAGTAGGAAATTGAAAGAGA | 0.00 | 0.70 | ▲ |
Vvi-miRC61* | TCTTTCATTTTCCTACTTTTT | 0.00 | 0.52 | ▲ |
Vvi-miRC62 | AAAGGCGAAGAAAAAGAAGATA | 1.75 | 0.79 | ↓ |
Vvi-miRC63 | AATATGGAGGACTGTGTTCTT | 0.61 | 1.75 | ↑ |
Vvi-miRC63* | GAACTCAGTTCCGGTACCATCTTCA | 0.09 | 0.09 | ● |
Vvi-miRC64 | TTGGATTCGCGCACAAACTCG | 0.00 | 1.13 | ▲ |
Vvi-miRC65 | TTGGATTCGCGCACAAACTCG | 0.00 | 1.13 | ▲ |
Vvi-miRC66 | CAGCAGTTGCTATTGTGGTTG | 0.87 | 8.38 | ↑ |
Vvi-miRC67 | AGAAGAGAGAGAGTACAGCTA | 1.31 | 9.60 | ↑ |
Vvi-miRC68 | TGGTACCAGGAGGGCAACTGTC | 0.00 | 1.05 | ▲ |
Vvi-miRC68* | TGTTGCCCTCCTGGTACCATC | 0.00 | 0.09 | ▲ |
Vvi-miRC69 | TCAAGGGTCGAACGGCTTTGC | 1.31 | 2.36 | ↑ |
Vvi-miRC70 | TTATGTGAGTGTTCGGCAAATC | 0.79 | 2.62 | ↑ |
Vvi-miRC71 | TTAGATGATCATCAACAAACA | 436.74 | 517.54 | ● |
Vvi-miRC71* | TTTTGTTGCTGGTCATCTAGTC | 2.09 | 3.05 | ● |
Vvi-miRC72 | TGCTTATTAGGTCTGCTGGCA | 0.00 | 0.61 | ▲ |
Vvi-miRC73 | TCAAAAGAGAAAATGTGGATG | 0.52 | 0.79 | ● |
Vvi-miRC73* | TCCATCTTCTCTCTTTTTACA | 0.00 | 0.09 | ▲ |
Vvi-miRC74 | TCGCAGGAGAGATGACGCCGT | 52.97 | 110.21 | ↑ |
Vvi-miRC74* | AGCATCATTTCTCCTGCATAG | 1.13 | 4.28 | ↑ |
Vvi-miRC75 | ATATTAGCAGCTGAGAACACA | 1.40 | 0.00 | ▼ |
Vvi-miRC76 | CAGGACTGGCAGTGATGGTTA | 1.13 | 0.00 | ▼ |
Vvi-miRC77 | GTGTTTTGCAGGATCAGACGG | 0.70 | 0.00 | ▼ |
Vvi-miRC78 | TGGCTGAGAACTTGATGGTTA | 2.71 | 0.00 | ▼ |
Vvi-miRC79 | TTCAAGTCAAAGTCGAACAAG | 0.87 | 0.00 | ▼ |
Vvi-miRC80 | AGCGAAGTAGTTGTAGGGCTT | 0.96 | 0.00 | ▼ |
Vvi-miRC81 | TTCGGAGGGAACTGACCGGTT | 0.70 | 0.00 | ▼ |
Vvi-miRC82 | TGCCAAGAAGCACATTCCTCC | 16.84 | 0.00 | ▼ |
Vvi-miRC82* | AGGAATGTGCTTCTTGGCATA | 0.09 | 0.00 | ▼ |
Vvi-miRC83 | CAAGTGTGGGATTTTGGGTGGCT | 0.52 | 0.00 | ▼ |
Vvi-miRC84 | GCAGCATCATGAAGATTCACA | 0.52 | 0.00 | ▼ |
Vvi-miRC84* | GGAATCTTGATGATGCTGCAT | 0.17 | 0.00 | ▼ |
Vvi-miRC85 | AGGTGCAGGTGAAGGTGCAGA | 1.75 | 0.00 | ▼ |
Vvi-miRC85* | TGCATTTGCACCTGCACCTTA | 0.96 | 0.00 | ▼ |
Vvi-miRC86 | GTAGCATCATCAAGATTCACA | 1.66 | 0.00 | ▼ |
Vvi-miRC87 | GGAATGTTGTCTGGCTCGAGGT | 0.70 | 0.00 | ▼ |
Vvi-miRC88 | ATGTATTTGAGGGAAAGCAAA | 0.44 | 0.00 | ▼ |
Vvi-miRC88* | TGTTTTCCCTCAAAAACATGT | 0.09 | 0.00 | ▼ |
Vvi-miRC89 | CTGCGGGTGGAAAAGGATTAGGC | 6.81 | 0.00 | ▼ |
Vvi-miRC89* | CTCATCCTTTTCCATCGGCAGCA | 0.35 | 0.00 | ▼ |
Vvi-miRC90 | TCTCAGCAACCAAGTAGAGCC | 5.93 | 0.00 | ▼ |