Table 2 Evaluation of enlarged “gold standard” gene set
Transcripts | Peptides | |||
|---|---|---|---|---|
63 | 100 | 63 | 100 | |
De Novo (CLC assembly cell) | 75% | 72% | - | - |
Cufflinks | 76% | 78% | - | - |
Partek genomics suite* | 33% | 24% | - | - |
ESTs | 70% | 69% | - | - |
TGICL | 84% | 81% | 66% | 62% |
CAP3 | 97% | 95% | 75% | 75% |
Final collection | 97% | 95% | 75% | 75% |