Table 4 Gene-trait matching with functions resulting from hierarchical clustering analysis
From: Comparative genomics of the Bifidobacterium brevetaxon
Carbohydrate | HCL cluster | Functions |
|---|---|---|
Ribose | Cluster45 | Ribose transport system permease protein rbsD |
Conserved hypothetical membrane spanning protein | ||
pfkB family carbohydrate kinase | ||
NADH-dependent butanol dehydrogenase 1 | ||
Phosphoglycolate phosphatase | ||
Inosine-uridine preferring nucleoside hydrolase | ||
pfkB family carbohydrate kinase | ||
N-(5’-phosphoribosyl) anthranilate isomerase | ||
Cobalt transport protein cbiQ | ||
Conserved hypothetical membrane spanning protein | ||
Ribokinase | ||
Galactan/Sucrose | Cluster6 | Amylosucrase or alpha-glucosidase |
Glycosyl hydrolases family 53, Endogalactanase, galactan metabolism | ||
Conserved hypothetical protein, PhoU-like domain | ||
Transporter | ||
Transcriptional regulator | ||
Narrowly conserved hypothetical membrane spanning protein, MFS superfamily | ||
Narrowly conserved hypothetical membrane spanning protein | ||
Conserved hypothetical membrane spanning protein | ||
Transporter | ||
Melezitose | Cluster10 | Raffinose synthase or seed imbibition protein Sip1/Alpha-galactosidase |
Cellobiose | Cluster36 | Glycosyl hydrolases family 32, Beta-fructosidase or sucrose-6-phosphate hydrolase |
Cellodextrin binding protein | ||
Mannitol/sorbitol | Cluster23 | AraC family transcriptional regulator |
Alcohol dehydrogenase | ||
Putative glyoxalase family protein | ||
Alcohol dehydrogenase | ||
Sugar isomerase (SIS) | ||
Putative ABC transporter, permease protein | ||
ABC transporter, permease protein | ||
ABC transporter, permease protein | ||
Xylulokinase | ||
Putative ROK family protein |