Skip to main content

Table 2 miRNA repertoire targeting conserved and lineage-specific R-genes in plants

From: Paleo-evolutionary plasticity of plant disease resistance genes

Lineage-specific WGD rounds

Conserved1

Non-conserved2

Species

Targets3

Total orth4

(%)5

Targets3

Total non-orth4

(%)5

Monocot

       

0 WGD

OS

178

521

34.17

771

2116

36.44

0 WGD

BD

156

495

31.52

319

1167

27.34

0 WGD

SB

158

413

38.26

489

1304

37.50

1 WGD

ZM

105

319

32.92

448

1548

28.94

Eudicot

       

0 WGD

VV

29

282

10.28

124

796

15.58

0 WGD

TC

77

149

51.68

554

1290

42.95

0 WGD

CP

22

101

21.78

116

602

19.27

0 WGD

FV

39

108

36.11

275

1344

20.46

1 WGD

MD

49

125

39.20

1516

4127

36.73

1 WGD

PT

59

122

48.36

389

1175

33.11

1 WGD

LJ

23

46

50.00

219

622

35.21

2 WGD

AT

51

74

68.92

685

1485

46.13

2 WGD

GM

72

148

48.65

1307

3162

41.33

  1. Note: OS, BD, SB, ZM, VV, TC, CP, FV, MD, PT, LJ, AT, and GM represent Rice, Brachypodium, Sorghum, Maize, Grape, Cacao, Papaya, Strawberry, Poplar, Lotus, Arabidopsis, and Soybean, respectively; 1Conserved R-genes are associated with orthologous genes with other monocots and eudicots species; 2Non-conserved R-genes do not have orthologous genes with other species either monocots and eudicots; 3Number of R-genes targeted by miRNAs; 4Number of total orthologous genes; 5Percentage of R-genes targeted by miRNAs.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us