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Table 1 Comparison of assemblers and identification of unique transcripts

From: A pipeline for the de novo assembly of the Themira biloba(Sepsidae: Diptera) transcriptome using a multiple k-mer length approach

Assembler

Contigs

Contig n50

BLAST hits

Unique hits

Velvet-Oases

18960

296

5114

1817

Abyss

19664

127

5341

1566

Newbler

13398

208

4302

1509

Trinity

25144

244

6826

2194

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BMC Genomics

ISSN: 1471-2164

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