From: Genomic structure of nucleotide diversity among Lyon rat models of metabolic syndrome
Comparison | PET | # Windows > PET | % Windows > PET | # divergent haplotype blocks | Average block length | SD block length | Average OSD first peak | Average OSD second peak | # SNPs in comparison | # SNPs in haplotype blocks | % SNPs in haplotype blocks |
---|---|---|---|---|---|---|---|---|---|---|---|
Lyon vs BN | |||||||||||
LH/BN | 4.50x10−4 | 18,242 | 67.07 | 1,431 | 1,431,996 | 1,506,679 | 5.44x10−5 | 1.69x10−3 | 3,127,650 | 3,078,898 | 98.44 |
LL/BN | 4.52x10−4 | 17,989 | 66.14 | 1,396 | 1,287,865 | 1,565,760 | 5.10x10−5 | 1.69x10−3 | 3,094,251 | 3,047,301 | 98.48 |
LN/BN | 4.57x10−4 | 17,982 | 66.11 | 1,398 | 1,285,500 | 1,493,916 | 5.05x10−5 | 1.69x10−3 | 3,082,757 | 3,036,234 | 98.49 |
Average | 4.53x10−4 | 18,071 | 66.44 | 1,408 | 1,335,120 | 1,522,118 | 5.20x10−5 | 1.69x10−3 | 3,101,553 | 3,054,144 | 98.47 |
Lyon pairwise | |||||||||||
LH/LN | 3.69x10−4 | 4,202 | 15.45 | 477 | 880,419 | 960,896 | 5.28x10−6 | 1.50x10−3 | 643,234 | 630,814 | 98.07 |
LH/LL | 3.84x10−4 | 4,041 | 14.86 | 485 | 828,584 | 851,988 | 5.68x10−6 | 1.56x10−3 | 643,233 | 630,878 | 98.08 |
LL/LN | 3.44x10−4 | 3,510 | 12.90 | 360 | 968,953 | 1,048,667 | 3.74x10−6 | 1.49x10−3 | 532,429 | 531,904 | 99.90 |
Average | 3.66x10−4 | 3,918 | 14.40 | 441 | 892,652 | 953,850 | 4.90x10−6 | 1.52x10−3 | 606,299 | 597,865 | 98.68 |