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Table 4 BlastX statistics per species, performed on consensus sequences obtained from the MIRA assemblies

From: High-throughput transcriptome sequencing and preliminary functional analysis in four Neotropical tree species

 

Carapa guianensis

Eperua falcata

Symphonia globulifera

Virola surinamensis

No of unigenes that did not return any blast result

4586 (21.1%)

7231 (30.9%)

4463 (26.1%)

6384 (30.3%)

No of blasted unigenes

17184 (78.9%)

16159 (69.1%)

12640 (73.9%)

14686 (69.7%)

[No unigenes after contaminant removal]

[16912]

[15664]

[12603]

[14545]

No of mapped unigenes

15879 (72.9%)

13629 (56.3%)

11639 (68.1%)

13000 (61.7%)

No of annotated unigenes

13962 (64.1%)

11240 (48.1%)

10164 (59.4%)

11073 (52.6%)

Total assembly length without contaminant (bp)

11266552

9501561

7728777

9666680

[Total length of blasted unigenes after removal of contaminant and unigenes with e-values >10−25]

[7746737]

[4789056]

[4748202]

[5887279]